RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 SSX7Q7RTT5 188 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 C17orf77Q96MU5 243 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 TM2D3Q9BRN9 247 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 SHANK2-AS3Q9BTD1 123 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 FGF8P55075 233 aaPredicted RBP11.15□□□□□ -0.62
SMPDL3A-201ENST00000368440 RAB31Q13636 194 aa11.15□□□□□ -0.62
SMPDL3A-201ENST00000368440 OR10G4Q8NGN3 311 aa11.15□□□□□ -0.62
SMPDL3A-201ENST00000368440 OR10G9Q8NGN4 311 aa11.15□□□□□ -0.62
SMPDL3A-201ENST00000368440 OR10G7Q8NGN6 311 aa11.15□□□□□ -0.62
SMPDL3A-201ENST00000368440 TMEM37Q8WXS4 190 aa11.15□□□□□ -0.62
SMPDL3A-201ENST00000368440 TENM3Q9P273 2699 aa11.15□□□□□ -0.62
SMPDL3A-201ENST00000368440 LOC102724200A0A096LPH7 203 aaPredicted RBP11.15□□□□□ -0.63
SMPDL3A-201ENST00000368440 B2MP61769 119 aa11.15□□□□□ -0.63
SMPDL3A-201ENST00000368440 ZNF726P1Q15940 193 aa11.15□□□□□ -0.63
SMPDL3A-201ENST00000368440 RETNQ9HD89 108 aa11.15□□□□□ -0.63
SMPDL3A-201ENST00000368440 RPL35AP18077 110 aaKnown RBP11.14□□□□□ -0.63
SMPDL3A-201ENST00000368440 RPL29P47914 159 aaKnown RBP11.14□□□□□ -0.63
SMPDL3A-201ENST00000368440 CCL20P78556 96 aa11.14□□□□□ -0.63
SMPDL3A-201ENST00000368440 SRSF3P84103 164 aaKnown RBP11.14□□□□□ -0.63
SMPDL3A-201ENST00000368440 MORN5Q5VZ52 161 aa11.14□□□□□ -0.63
SMPDL3A-201ENST00000368440 RPP25LQ8N5L8 163 aaKnown RBP11.14□□□□□ -0.63
SMPDL3A-201ENST00000368440 MED9Q9NWA0 146 aa11.14□□□□□ -0.63
SMPDL3A-201ENST00000368440 SOCS3O14543 225 aa11.13□□□□□ -0.63
SMPDL3A-201ENST00000368440 COX7A2P2O60397 106 aa11.13□□□□□ -0.63
SMPDL3A-201ENST00000368440 CMC4P56277 68 aaPredicted RBP11.13□□□□□ -0.63
SMPDL3A-201ENST00000368440 ACOT6Q3I5F7 207 aaPredicted RBP11.13□□□□□ -0.63
SMPDL3A-201ENST00000368440 PSMG4Q5JS54 123 aa11.13□□□□□ -0.63
SMPDL3A-201ENST00000368440 LINC00305Q7Z4B0 112 aa11.13□□□□□ -0.63
SMPDL3A-201ENST00000368440 FAM210AQ96ND0 272 aa11.13□□□□□ -0.63
SMPDL3A-201ENST00000368440 SLC39A9Q9NUM3 307 aa11.13□□□□□ -0.63
SMPDL3A-201ENST00000368440 M6PRP20645 277 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 DPPA3Q6W0C5 159 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 U3KQK5 164 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 KNCNA6PVL3 124 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 MBP02144 154 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 S100A1P23297 94 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 GALR1P47211 349 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 C10orf113Q5VZT2 155 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 IQCF2Q8IXL9 164 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 RCHY1Q96PM5 261 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 TREM1Q9NP99 234 aa11.12□□□□□ -0.63
SMPDL3A-201ENST00000368440 NBEAL2Q6ZNJ1 2754 aa11.11□□□□□ -0.63
SMPDL3A-201ENST00000368440 MAP1LC3B2A6NCE7 125 aa11.11□□□□□ -0.63
SMPDL3A-201ENST00000368440 MRPS12O15235 138 aaKnown RBP11.11□□□□□ -0.63
SMPDL3A-201ENST00000368440 DEFB1P60022 68 aa11.11□□□□□ -0.63
SMPDL3A-201ENST00000368440 ACTR3CQ9C0K3 210 aaPredicted RBP11.11□□□□□ -0.63
SMPDL3A-201ENST00000368440 MAP1LC3BQ9GZQ8 125 aa11.11□□□□□ -0.63
SMPDL3A-201ENST00000368440 ZMAT4Q9H898 229 aa11.11□□□□□ -0.63
SMPDL3A-201ENST00000368440 KCNIP2Q9NS61 270 aa11.11□□□□□ -0.63
SMPDL3A-201ENST00000368440 AGRNO00468 2067 aa11.11□□□□□ -0.63
SMPDL3A-201ENST00000368440 A0A1W2PPV4 95 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 S100A7P31151 101 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 CDC34P49427 236 aaPredicted RBP11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 TOR2AQ5JU69 321 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 LYPD6BQ8NI32 183 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 RAB24Q969Q5 203 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 GPR82Q96P67 336 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 SPATA25Q9BR10 227 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 EIF5A2Q9GZV4 153 aaKnown RBP11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 DNAJC4Q9NNZ3 241 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 ELOA3CA0A087WX78 387 aaPredicted RBP11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 TRAV5A0A0B4J249 113 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 SNRPD3P62318 126 aaKnown RBP11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 SPATA31B1PQ5VZV4 182 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 OR1L4Q8NGR5 311 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 TMPRSS5Q9H3S3 457 aa11.1□□□□□ -0.63
SMPDL3A-201ENST00000368440 CTXND1A0A1B0GTU2 59 aa11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 RAB19A4D1S5 217 aa11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 HBE1P02100 147 aa11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 SNRPCP09234 159 aaKnown RBP11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 RPL7P18124 248 aaKnown RBP11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 PSMB3P49720 205 aa11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 ACTL10Q5JWF8 245 aa11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 IGFL4Q6B9Z1 124 aa11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 C20orf173Q96LM9 149 aa11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 LINC00052Q96N35 136 aa11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 SEPSECSQ9HD40 501 aaKnown RBP11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 GNG13Q9P2W3 67 aa11.09□□□□□ -0.63
SMPDL3A-201ENST00000368440 ATF4P18848 351 aaPredicted RBP11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 APOC4P55056 127 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 GUK1Q16774 197 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 S100A7AQ86SG5 101 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 STHQ8IWL8 128 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 C16orf92Q96LL3 132 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 PFDN5Q99471 154 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 RARRES2Q99969 163 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 TRAV8-2A0A0B4J237 113 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 ISLRO14498 428 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 MEOX2P50222 304 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 GDF5OSQ5U4N7 250 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 FAM78BQ5VT40 261 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 TRPT1Q86TN4 253 aaKnown RBP11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 MBD3L1Q8WWY6 194 aa11.08□□□□□ -0.64
SMPDL3A-201ENST00000368440 A0A087X0K7 114 aa11.07□□□□□ -0.64
SMPDL3A-201ENST00000368440 KIR2DL5BA0A0G2JN68 375 aa11.07□□□□□ -0.64
SMPDL3A-201ENST00000368440 KIR2DL5BA0A0G2JPC4 375 aa11.07□□□□□ -0.64
SMPDL3A-201ENST00000368440 ID1P41134 155 aa11.07□□□□□ -0.64
SMPDL3A-201ENST00000368440 DEFB135Q30KP9 77 aa11.07□□□□□ -0.64
SMPDL3A-201ENST00000368440 KIR2DL5AQ8N109 375 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms