RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 SPATA31B1PQ5VZV4 182 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 INTS1Q8N201 2190 aaKnown RBP8.31□□□□□ -1.08
CLIP1-202ENST00000358808 IL18BPO95998 194 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 IGKV1-5P01602 117 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 IGFBP3P17936 291 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-202ENST00000358808 C9orf153Q5TBE3 101 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 TBX6O95947 436 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-202ENST00000358808 POLEQ07864 2286 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 PINLYPA6NC86 204 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 SMKR1H3BMG3 65 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 CLPSL2Q6UWE3 100 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 IGF2BP2-AS1Q96M15 143 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 CNOT1A5YKK6 2376 aaKnown RBP8.3□□□□□ -1.08
CLIP1-202ENST00000358808 BUB1B-PAK6H3BSN5 160 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 SELLP14151 372 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 SRSF3P84103 164 aaKnown RBP8.3□□□□□ -1.08
CLIP1-202ENST00000358808 RNF5Q99942 180 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 J3QKU1 62 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 SAA4P35542 130 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 FOXG1P55316 489 aaPredicted RBP8.3□□□□□ -1.08
CLIP1-202ENST00000358808 Q0VFX4 171 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 SPINK13Q1W4C9 94 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 TRGV9Q99603 122 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 TMEM243Q9BU79 118 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 DOCK10Q96BY6 2186 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 IGLV3-12A0A075B6K2 115 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 A0A0G2JNJ9 132 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 ANGP03950 147 aaKnown RBP8.3□□□□□ -1.08
CLIP1-202ENST00000358808 Q9UFV3 132 aa8.3□□□□□ -1.08
CLIP1-202ENST00000358808 Q9HAA7 133 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 IGHV3-38A0A0C4DH36 116 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 MSMBP08118 114 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 NABP1Q96AH0 204 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 RPL18AQ02543 176 aaKnown RBP8.29□□□□□ -1.08
CLIP1-202ENST00000358808 TCF15Q12870 199 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 IL17RELQ6ZVW7 336 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 LYZL4Q96KX0 146 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 RHODO00212 210 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 HEPN1Q6WQI6 88 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 RPRMLQ8N4K4 120 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 PKIGQ9Y2B9 76 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 RFNGQ9Y644 331 aa8.29□□□□□ -1.08
CLIP1-202ENST00000358808 hDV102S1A0JD36 115 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 CT83Q5H943 113 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 TREML4Q6UXN2 200 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 ZNRF2Q8NHG8 242 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 PRB1P04280 392 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 COL8A2P25067 703 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 TMEM190Q8WZ59 177 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 VSIRQ9H7M9 311 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 CADP27708 2225 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 LY6HO94772 140 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 C4orf48Q5BLP8 95 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 NEGR1Q7Z3B1 354 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 TIMM17AQ99595 171 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 NEUROG3Q9Y4Z2 214 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 ROS1P08922 2347 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 A6NNC1 897 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 IGHG4P01861 327 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 BTCP35070 178 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 TMEM242Q9NWH2 141 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 TP53TG1Q9Y2A0 90 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 H0YJW9 148 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 EGR2P11161 476 aaPredicted RBP8.28□□□□□ -1.08
CLIP1-202ENST00000358808 NBL1P41271 181 aa8.28□□□□□ -1.08
CLIP1-202ENST00000358808 I3L3M4 83 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 GAS1P54826 345 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 MTCL1Q9Y4B5 1905 aaKnown RBP8.27□□□□□ -1.09
CLIP1-202ENST00000358808 SIP14410 1827 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 A0A087X0K7 114 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 PLSCR4Q9NRQ2 329 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 GATA3P23771 443 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 WDR83OSQ9Y284 106 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 A0A087WV48 116 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 TMEM258P61165 79 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 ATP6V0BQ99437 205 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 RNF126Q9BV68 326 aa8.27□□□□□ -1.09
CLIP1-202ENST00000358808 A0A0J9YY99 117 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 EFNA2O43921 213 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 ARMS2P0C7Q2 107 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 SPINK8P0C7L1 97 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 CR1LQ2VPA4 569 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 A0A1B0GTI1 187 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 CRYGCP07315 174 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 MRPL52Q86TS9 123 aaKnown RBP8.26□□□□□ -1.09
CLIP1-202ENST00000358808 CD177Q8N6Q3 437 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 TET1Q8NFU7 2136 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 IGKV1-39P01597 117 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 IGKV1D-39P04432 117 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 TIRAPP58753 221 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 GAFA1Q96PS6 74 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 NOTCH3Q9UM47 2321 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 FNDC1Q4ZHG4 1894 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-202ENST00000358808 ZC2HC1BQ5TFG8 222 aa8.26□□□□□ -1.09
CLIP1-202ENST00000358808 SRRM5B3KS81 715 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 IGLV2-23P01705 113 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 PRB2P02812 416 aaPredicted RBP8.25□□□□□ -1.09
CLIP1-202ENST00000358808 AMN1Q8IY45 258 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 BAALCQ8WXS3 180 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 ZNF503Q96F45 646 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms