RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 NBPF19A0A087WUL8 3843 aa10.39□□□□□ -0.75
COL18A1-201ENST00000342220 TRAV26-1A0A087WT03 109 aa10.39□□□□□ -0.75
COL18A1-201ENST00000342220 GAGE10A6NGK3 116 aa10.39□□□□□ -0.75
COL18A1-201ENST00000342220 TMEM95Q3KNT9 176 aa10.39□□□□□ -0.75
COL18A1-201ENST00000342220 C5orf17Q8NAS9 161 aa10.39□□□□□ -0.75
COL18A1-201ENST00000342220 IL36BQ9NZH7 164 aa10.39□□□□□ -0.75
COL18A1-201ENST00000342220 ZFHX3Q15911 3703 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 J3QKU1 62 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 LINC00869P0C866 280 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 AZU1P20160 251 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 PIP4P2Q8N4L2 257 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 IGLL1P15814 213 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 RAB9AP51151 201 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 PRR20EP86478 221 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 PRR20CP86479 221 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 PRR20DP86480 221 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 PRR20BP86481 221 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 PRR20AP86496 221 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 TMEM177Q53S58 311 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 RCHY1Q96PM5 261 aa10.38□□□□□ -0.75
COL18A1-201ENST00000342220 NBR2O15453 112 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 CRYBA4P53673 196 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 SUB1P53999 127 aaKnown RBP eCLIP10.37□□□□□ -0.754e-6■■□□□ 11.9
COL18A1-201ENST00000342220 OR8I2Q8N0Y5 310 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 SGK494Q96LW2 274 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 CHRDL1Q9BU40 450 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 OR2J3O76001 311 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 CRYBB3P26998 211 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 C10orf105Q8TEF2 133 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 BLNKQ8WV28 456 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 C11orf52Q96A22 123 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 Q96MF0 132 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 ZNF48Q96MX3 618 aaPredicted RBP10.37□□□□□ -0.75
COL18A1-201ENST00000342220 ATP6V0BQ99437 205 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 RASL11BQ9BPW5 248 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 MRPL36Q9P0J6 103 aaKnown RBP10.37□□□□□ -0.75
COL18A1-201ENST00000342220 IGKV1OR2-108A0A075B7D4 117 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 LYZP61626 148 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 LCNL1Q6ZST4 164 aa10.37□□□□□ -0.75
COL18A1-201ENST00000342220 IGHV3-49A0A0A0MS15 119 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 A0A1W2PS18 150 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 CX3CL1P78423 397 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 TMEM30BQ3MIR4 351 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 FNDC4Q9H6D8 234 aaPredicted RBP10.36□□□□□ -0.75
COL18A1-201ENST00000342220 LINC00574Q9H8X3 128 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 TRAV5A0A0B4J249 113 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 G3V318 75 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 NPFFO15130 113 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 IGLV2-23P01705 113 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 RNASE2P10153 161 aaKnown RBP10.36□□□□□ -0.75
COL18A1-201ENST00000342220 CENPWQ5EE01 88 aa10.36□□□□□ -0.75
COL18A1-201ENST00000342220 Q71RC1 249 aaPredicted RBP10.36□□□□□ -0.75
COL18A1-201ENST00000342220 CENPVL3A0A0U1RRI6 287 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 C9JCJ5 164 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 OVOL3O00110 214 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 FAM106CPP0CH98 169 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 TMEM167AQ8TBQ9 72 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 KCNS1Q96KK3 526 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 THYN1Q9P016 225 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 TRAV9-2A0A087WT02 112 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 H3BUX3 64 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 MSMBP08118 114 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 RPEL1Q2QD12 228 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 HIST2H2BDQ6DRA6 164 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 CCDC144NLQ6NUI1 221 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 PQLC2Q6ZP29 291 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 ZNF503Q96F45 646 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 RNASE7Q9H1E1 156 aaKnown RBP10.35□□□□□ -0.75
COL18A1-201ENST00000342220 NAT8BQ9UHF3 227 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 V9GYV3 84 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 HELTA6NFD8 242 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 LINC01548A6NM66 108 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 M0R1W7 72 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 IGLC1P0CG04 106 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 BVES-AS1Q5T3Y7 98 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 LINC00311Q8N616 119 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 DEFB125Q8N687 156 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 NDUFA4L2Q9NRX3 87 aa10.35□□□□□ -0.75
COL18A1-201ENST00000342220 COX7A2P2O60397 106 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 ZNF324O75467 553 aaPredicted RBP10.34□□□□□ -0.75
COL18A1-201ENST00000342220 AVPP01185 164 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 GNG4P50150 75 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 SLC35B1P78383 322 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 Q0VG73 95 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 LY6G5BQ8NDX9 201 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 IGKV3-7A0A075B6H7 116 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 PMCHL1Q16048 86 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 NAA38Q9BRA0 125 aaKnown RBP10.34□□□□□ -0.75
COL18A1-201ENST00000342220 PEF1Q9UBV8 284 aaKnown RBP10.34□□□□□ -0.75
COL18A1-201ENST00000342220 ARL2-SNX15V9GYD0 113 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 IGHV3-66A0A0C4DH42 116 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 CKS1BP61024 79 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 BCL6BQ8N143 479 aaPredicted RBP10.34□□□□□ -0.75
COL18A1-201ENST00000342220 MXRA5Q9NR99 2828 aa10.34□□□□□ -0.75
COL18A1-201ENST00000342220 ZNF207O43670 478 aaKnown RBP10.33□□□□□ -0.76
COL18A1-201ENST00000342220 TCL1AP56279 114 aa10.33□□□□□ -0.76
COL18A1-201ENST00000342220 RPL24P83731 157 aaKnown RBP10.33□□□□□ -0.76
COL18A1-201ENST00000342220 POU2AF1Q16633 256 aa10.33□□□□□ -0.76
COL18A1-201ENST00000342220 AP1S3Q96PC3 154 aa10.33□□□□□ -0.76
COL18A1-201ENST00000342220 NDPQ00604 133 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms