RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 SMIM30A4D0T7 59 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 ARL14EPLP0DKL9 152 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 EGR2P11161 476 aaPredicted RBP2.72□□□□□ -1.97
CSMD3-202ENST00000339701 RAE1P78406 368 aaKnown RBP2.72□□□□□ -1.97
CSMD3-202ENST00000339701 COA6Q5JTJ3 125 aaKnown RBP2.72□□□□□ -1.97
CSMD3-202ENST00000339701 CDCP2Q5VXM1 449 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 TEX43Q6ZNM6 134 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 Q6ZWC4 215 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 TMEM179BQ7Z7N9 219 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 C1orf43Q9BWL3 253 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 ABCA12Q86UK0 2595 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 H3BP45 60 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 RHOHQ15669 191 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 Q5BKY6 102 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 ZNF493Q6ZR52 646 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 GGTLC1Q9BX51 225 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 RTN4RQ9BZR6 473 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 C1orf122Q6ZSJ8 110 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 FAM89BQ8N5H3 189 aa2.72□□□□□ -1.97
CSMD3-202ENST00000339701 MBNL3Q9NUK0 354 aaKnown RBP2.72□□□□□ -1.97
CSMD3-202ENST00000339701 A0A0G2JNJ9 132 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 A0A1W2PR77 199 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 EIF3GO75821 320 aaKnown RBP eCLIP2.71□□□□□ -1.97
CSMD3-202ENST00000339701 IAPPP10997 89 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 FAM120AOSQ5T036 256 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 GOLT1AQ6ZVE7 132 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 MAVSQ7Z434 540 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 LRRC75A-AS1Q8N1F1 130 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 TMEM167AQ8TBQ9 72 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 Q9H3A6 140 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 Q9UFV3 132 aa2.71□□□□□ -1.97
CSMD3-202ENST00000339701 RBAKDNA6NC62 111 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 C17orf100A8MU93 164 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 HIGD1CA8MV81 97 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 C1QCP02747 245 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 PRCDQ00LT1 54 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 ID3Q02535 119 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 GAGE5Q13069 117 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 GAGE6Q13070 117 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 CENPWQ5EE01 88 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 CST9LQ9H4G1 147 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 IDI2-AS1Q9NZ38 188 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 PAX9P55771 341 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 HGFACQ04756 655 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 ZNF56Q15929 161 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 CD300EQ496F6 205 aaPredicted RBP2.71□□□□□ -1.98
CSMD3-202ENST00000339701 HEPN1Q6WQI6 88 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 RNF144BQ7Z419 303 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 WFDC12Q8WWY7 111 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 MRPL53Q96EL3 112 aaKnown RBP2.71□□□□□ -1.98
CSMD3-202ENST00000339701 PRR15LQ9BU68 103 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 SHISA8B8ZZ34 492 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 INSL3P51460 131 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 COX20Q5RI15 118 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 DSCR8Q96T75 97 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 IGKV1D-42A0A075B6H8 117 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 ETV2O00321 342 aaPredicted RBP2.71□□□□□ -1.98
CSMD3-202ENST00000339701 NTN3O00634 580 aaPredicted RBP2.71□□□□□ -1.98
CSMD3-202ENST00000339701 TAX1BP3O14907 124 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 GCHFRP30047 84 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 SS18Q15532 418 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 MBNL2Q5VZF2 373 aaKnown RBP2.71□□□□□ -1.98
CSMD3-202ENST00000339701 ZNF492Q9P255 531 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 A0A1B0GTL3 188 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 NDUFA4O00483 81 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 UPK3AO75631 287 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 NPC2P61916 151 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 OTPQ5XKR4 325 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 FOXA2Q9Y261 457 aaPredicted RBP2.71□□□□□ -1.98
CSMD3-202ENST00000339701 H3BTX0 84 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 HLA-DRB4P13762 266 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 LGALS9BQ3B8N2 356 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 PEAR1Q5VY43 1037 aaPredicted RBP2.71□□□□□ -1.98
CSMD3-202ENST00000339701 TMEM42Q69YG0 159 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 LGALS9CQ6DKI2 356 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 LINC01587Q99440 93 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 WDR83OSQ9Y284 106 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 HLA-DRB4X5D2U9 266 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 PLA2G10O15496 165 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 ZNF708P17019 499 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 HERVK_113P63121 156 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 COL10A1Q03692 680 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 ZFP2Q6ZN57 461 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 ZNF580Q9UK33 172 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 CRYGSP22914 178 aa2.71□□□□□ -1.98
CSMD3-202ENST00000339701 FOXA3P55318 350 aaPredicted RBP2.71□□□□□ -1.98
CSMD3-202ENST00000339701 WIPF2Q8TF74 440 aaPredicted RBP2.71□□□□□ -1.98
CSMD3-202ENST00000339701 PTPRBP23467 1997 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 FCN3O75636 299 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 WT1P19544 449 aaPredicted RBP2.7□□□□□ -1.98
CSMD3-202ENST00000339701 GFI1BQ5VTD9 330 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 SLC25A47Q6Q0C1 308 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 SRSF12Q8WXF0 261 aaKnown RBP2.7□□□□□ -1.98
CSMD3-202ENST00000339701 C20orf173Q96LM9 149 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 C1QTNF5Q9BXJ0 243 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 SIGLEC8Q9NYZ4 499 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 HIGD1BQ9P298 99 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 IGLV3-12A0A075B6K2 115 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 TRAV2A0A0B4J234 112 aa2.7□□□□□ -1.98
CSMD3-202ENST00000339701 A0A1B0GX51 115 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 166.3 ms