RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TMEM89A2RUT3 159 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 CLDN34H7C241 214 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 NDUFA4O00483 81 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 SLC25A5P05141 298 aaKnown RBP3.17□□□□□ -1.9
MCF2-201ENST00000338585 RNASE1P07998 156 aaKnown RBP3.17□□□□□ -1.9
MCF2-201ENST00000338585 ELANEP08246 267 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 HILS1P60008 231 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 DEFB136Q30KP8 78 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 IGFL4Q6B9Z1 124 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 SIGLEC15Q6ZMC9 328 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 C11orf44Q8N8P7 122 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 C2CD4CQ8TF44 421 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 ZNF418Q8TF45 676 aaPredicted RBP3.17□□□□□ -1.9
MCF2-201ENST00000338585 ISOC2Q96AB3 205 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 ATP6V0BQ99437 205 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 TXNDC17Q9BRA2 123 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 NAT8Q9UHE5 227 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 SETD2Q9BYW2 2564 aaPredicted RBP3.16□□□□□ -1.9
MCF2-201ENST00000338585 F8P00451 2351 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 IGHV4OR15-8A0A075B7B6 117 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 A0A087WW49 117 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 M0R3E3 92 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 PEX7O00628 323 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 GGCTO75223 188 aaKnown RBP3.16□□□□□ -1.9
MCF2-201ENST00000338585 PF4P02776 101 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 HLA-DMBP28068 263 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 CENPWQ5EE01 88 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 KHDC1LQ5JSQ8 128 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 LINC01551Q86U37 167 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 RNF152Q8N8N0 203 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 NHLRC2Q8NBF2 726 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 OCC1Q8TAD7 63 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 TMEM190Q8WZ59 177 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 DUX3Q96PT4 197 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 METTL26Q96S19 204 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 EPDR1Q9UM22 224 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 U3KQE9 123 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 NSD1Q96L73 2696 aaPredicted RBP3.16□□□□□ -1.9
MCF2-201ENST00000338585 TRAV8-1A0A0A6YYK1 113 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 HELTA6NFD8 242 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 A6NJY4 79 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 K7EN84 100 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 ISLRO14498 428 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 NDUFS6O75380 124 aaKnown RBP3.16□□□□□ -1.9
MCF2-201ENST00000338585 CRYBA1P05813 215 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 LGALS1P09382 135 aaKnown RBP3.16□□□□□ -1.9
MCF2-201ENST00000338585 RPL7P18124 248 aaKnown RBP3.16□□□□□ -1.9
MCF2-201ENST00000338585 RHEBQ15382 184 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 RNF212Q495C1 297 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 FAM209BQ5JX69 171 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 LINC01006Q8NI28 216 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 UBE2E2Q96LR5 201 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 ASCL2Q99929 193 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 OTORQ9NRC9 128 aa3.16□□□□□ -1.9
MCF2-201ENST00000338585 ZNF785A8K8V0 405 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 IGLV2-8P01709 118 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 TCRAP04437 139 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 CD28P10747 220 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 FOSL1P15407 271 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 PNRC1Q12796 327 aaPredicted RBP3.15□□□□□ -1.9
MCF2-201ENST00000338585 SCGB2A2Q13296 93 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 OR5I1Q13606 314 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 RPEL1Q2QD12 228 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 GOLT1AQ6ZVE7 132 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 S100A7AQ86SG5 101 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 C5orf17Q8NAS9 161 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 WIPF2Q8TF74 440 aaPredicted RBP3.15□□□□□ -1.9
MCF2-201ENST00000338585 GLMPQ8WWB7 406 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 IGF2BP2-AS1Q96M15 143 aa3.15□□□□□ -1.9
MCF2-201ENST00000338585 IGKV3-7A0A075B6H7 116 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 IGHV7-4-1A0A0J9YVY3 117 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 A0A1W2PRX2 142 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 ZNF705FA8MVS1 300 aaPredicted RBP3.15□□□□□ -1.91
MCF2-201ENST00000338585 C9JCJ5 164 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 HOXD3P31249 432 aaPredicted RBP3.15□□□□□ -1.91
MCF2-201ENST00000338585 GNG4P50150 75 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 CNN1P51911 297 aaKnown RBP3.15□□□□□ -1.91
MCF2-201ENST00000338585 SLURP1P55000 103 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 SYNJ2BPP57105 145 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 C16orf54Q6UWD8 224 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 GPHB5Q86YW7 130 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 RNF182Q8N6D2 247 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 CMTM2Q8TAZ6 248 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 ATG101Q9BSB4 218 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 ZNF331Q9NQX6 463 aaPredicted RBP3.15□□□□□ -1.91
MCF2-201ENST00000338585 DAZ1Q9NQZ3 744 aaKnown RBP3.15□□□□□ -1.91
MCF2-201ENST00000338585 SMCO4Q9NRQ5 59 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 URGCP-MRPS24S4R325 110 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 SETXQ7Z333 2677 aaKnown RBP3.15□□□□□ -1.91
MCF2-201ENST00000338585 IGKV2-40A0A087WW87 121 aaPredicted RBP3.15□□□□□ -1.91
MCF2-201ENST00000338585 A0A087WWC5 75 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 A0A087X0K7 114 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 TMEM213A2RRL7 107 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 TSPAN4O14817 238 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 IGKV2D-40P01614 121 aaPredicted RBP3.15□□□□□ -1.91
MCF2-201ENST00000338585 IGLV2-11P01706 119 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 MGST1P10620 155 aaKnown RBP3.15□□□□□ -1.91
MCF2-201ENST00000338585 GALR1P47211 349 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 CDX1P47902 265 aaPredicted RBP3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms