RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 SRRM4A7MD48 611 aaKnown RBP4.5□□□□□ -1.69
PTPRB-202ENST00000334414 ZNF876PQ49A33 203 aa4.5□□□□□ -1.69
PTPRB-202ENST00000334414 LINC01620Q4KN68 170 aa4.5□□□□□ -1.69
PTPRB-202ENST00000334414 FAM168AQ92567 244 aa4.5□□□□□ -1.69
PTPRB-202ENST00000334414 J3QQQ9 107 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 CXCL5P42830 114 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 C15orf32Q32M92 178 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 TRAV13-1A0A0B4J241 112 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 LYRM9A8MSI8 78 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 G3V4G9 280 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 IGLV3-19P01714 112 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 FRMPD3Q5JV73 1810 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 UQCRQO14949 82 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 C1QCP02747 245 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 IGHV1-8P0DP01 117 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 CFC1BP0CG36 223 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 CFC1P0CG37 223 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 ATP5J2P56134 94 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 CFHR1Q03591 330 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 ZNF474Q6S9Z5 364 aaPredicted RBP4.49□□□□□ -1.69
PTPRB-202ENST00000334414 DEFB123Q8N688 67 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 MRPL53Q96EL3 112 aaKnown RBP4.49□□□□□ -1.69
PTPRB-202ENST00000334414 NDUFA12Q9UI09 145 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 C15orf62A8K5M9 175 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 RPL15P61313 204 aaKnown RBP4.49□□□□□ -1.69
PTPRB-202ENST00000334414 TRBV19A0A075B6N1 114 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 CCL4P13236 92 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 IGFBP6P24592 240 aaPredicted RBP4.49□□□□□ -1.69
PTPRB-202ENST00000334414 FOXL2NBQ6ZUU3 175 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 MAFAQ8NHW3 353 aaPredicted RBP4.49□□□□□ -1.69
PTPRB-202ENST00000334414 LCTP09848 1927 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 IGHV1-3A0A0C4DH29 117 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 B5MCH6 92 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 GATA2P23769 480 aaPredicted RBP4.49□□□□□ -1.69
PTPRB-202ENST00000334414 CD55P08174 381 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 VWC2Q2TAL6 325 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 COLCA1Q6ZS62 124 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 DMRTC2Q8IXT2 367 aaPredicted RBP4.49□□□□□ -1.69
PTPRB-202ENST00000334414 EXOC3-AS1Q8N2X6 119 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 FAM216BQ8N7L0 139 aa4.49□□□□□ -1.69
PTPRB-202ENST00000334414 NAA38Q9BRA0 125 aaKnown RBP4.49□□□□□ -1.69
PTPRB-202ENST00000334414 NDUFC1O43677 76 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 FOXC1Q12948 553 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 C8orf31Q8N9H6 132 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 FOXI1Q12951 378 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 C8orf86Q6ZUL3 223 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 SCRT1Q9BWW7 348 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 CELA3AP09093 270 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 DEFB124Q8NES8 71 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 ICOSQ9Y6W8 199 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 IGKV3D-20A0A0C4DH25 116 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 FAM236AA0A1B0GUQ0 79 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 FAM236BA0A1B0GV22 79 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 NDUFA4L2Q9NRX3 87 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 THAP8Q8NA92 274 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 IMUPQ9GZP8 106 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 E9PQ18 207 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 IGHV1-2P23083 117 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 PNRC2Q9NPJ4 139 aaKnown RBP4.48□□□□□ -1.69
PTPRB-202ENST00000334414 IGKV1D-43A0A0B4J1Z2 117 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 ZNF134P52741 427 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 MRPL51Q4U2R6 128 aaKnown RBP4.48□□□□□ -1.69
PTPRB-202ENST00000334414 C14orf178Q8N769 122 aaPredicted RBP4.48□□□□□ -1.69
PTPRB-202ENST00000334414 WDR90Q96KV7 1748 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 ZNF561-AS1K7EIQ3 104 aa4.48□□□□□ -1.69
PTPRB-202ENST00000334414 H3BRN7 92 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 PSMB8P28062 276 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 SDHAF1A6NFY7 115 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 INS-IGF2F8WCM5 200 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 IGHV3-23P01764 117 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 ARMS2P0C7Q2 107 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 LY6EQ16553 131 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 SLC25A29Q8N8R3 303 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 TEX48A0A1B0GUV7 120 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 A0A1W2PR77 199 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 C11orf44Q8N8P7 122 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 BUB1B-PAK6H3BSN5 160 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 BMPERQ8N8U9 685 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 IGHV3-66A0A0C4DH42 116 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 FOXF2Q12947 444 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 ZNF833PQ6ZTB9 187 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 SPINK2P20155 84 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 NBL1P41271 181 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 GATA4P43694 442 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 HAMPP81172 84 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 TRGV1A0A0A0MS02 117 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 RNASE2P10153 161 aaKnown RBP4.47□□□□□ -1.69
PTPRB-202ENST00000334414 C1orf122Q6ZSJ8 110 aa4.47□□□□□ -1.69
PTPRB-202ENST00000334414 CHKB-CPT1BH3BT56 60 aa4.46□□□□□ -1.69
PTPRB-202ENST00000334414 NTF4P34130 210 aa4.46□□□□□ -1.69
PTPRB-202ENST00000334414 MRPS36P82909 103 aaKnown RBP4.46□□□□□ -1.69
PTPRB-202ENST00000334414 CASP8AP2Q9UKL3 1982 aa4.46□□□□□ -1.69
PTPRB-202ENST00000334414 K7EM74 188 aa4.46□□□□□ -1.69
PTPRB-202ENST00000334414 TMEM219Q86XT9 240 aa4.46□□□□□ -1.69
PTPRB-202ENST00000334414 FAM110DQ8TAY7 271 aaPredicted RBP4.46□□□□□ -1.69
PTPRB-202ENST00000334414 A0A1B0GX51 115 aa4.46□□□□□ -1.7
PTPRB-202ENST00000334414 IGLL5B9A064 214 aa4.46□□□□□ -1.7
PTPRB-202ENST00000334414 IGLC1P0CG04 106 aa4.46□□□□□ -1.7
PTPRB-202ENST00000334414 C5orf64Q2M2E5 130 aa4.46□□□□□ -1.7
PTPRB-202ENST00000334414 TRIP12Q14669 1992 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms