RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 Q6ZR03 302 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 RNF182Q8N6D2 247 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 LSM4Q9Y4Z0 139 aaKnown RBP8.26□□□□□ -1.09
CHD3-201ENST00000330494 C15orf62A8K5M9 175 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 TEX38Q6PEX7 206 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 WDR86Q86TI4 376 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 ZNF664Q8N3J9 261 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 CHCHD5Q9BSY4 110 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 A0A087X0K7 114 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 PRB1P04280 392 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 IFI27P40305 119 aaPredicted RBP8.26□□□□□ -1.09
CHD3-201ENST00000330494 LCN12Q6JVE5 192 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 UBE2DNLQ8IWF7 75 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 OR9G4Q8NGQ1 327 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 TRGV1A0A0A0MS02 117 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 H3BRM9 83 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 Q6AWC8 147 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 IGKV1-6A0A0C4DH72 117 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 SMKR1H3BMG3 65 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 HSD52Q0P140 79 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 TRAV9-1A0A075B6T8 112 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 TMEM8BA6NDV4 472 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 OSTCQ9NRP0 149 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 TRBV7-1A0A0A6YYK4 115 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 TRAV2A0A0B4J234 112 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 WT1P19544 449 aaPredicted RBP8.25□□□□□ -1.09
CHD3-201ENST00000330494 LYZL1Q6UWQ5 148 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 SH2D1AO60880 128 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 GRNP28799 593 aaKnown RBP8.25□□□□□ -1.09
CHD3-201ENST00000330494 SSBP2P81877 361 aaPredicted RBP8.25□□□□□ -1.09
CHD3-201ENST00000330494 G3V318 75 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.25□□□□□ -1.09
CHD3-201ENST00000330494 HIST1H4AP62805 103 aaKnown RBP8.25□□□□□ -1.09
CHD3-201ENST00000330494 NACAE9PAV3 2078 aa8.25□□□□□ -1.09
CHD3-201ENST00000330494 SRSF1Q07955 248 aaKnown RBP eCLIP8.24□□□□□ -1.09
CHD3-201ENST00000330494 D6R8Y8 96 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 OVOL1O14753 267 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 TNFRSF6BO95407 300 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 CFHR3Q02985 330 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 KIAA1549LQ6ZVL6 1849 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 ADARB2-AS1A8MUL3 147 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 ASPHD1Q5U4P2 390 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 FOXL2NBQ6ZUU3 175 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 TRGV9Q99603 122 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 hDV102S1A0JD36 115 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 ATP6V0E1O15342 81 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 FGF16O43320 207 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 MSMBP08118 114 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 MPV17L2Q567V2 206 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 A0A1W2PPI3 338 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 ZNF562Q6V9R5 426 aa8.24□□□□□ -1.09
CHD3-201ENST00000330494 PHLDA1Q8WV24 401 aaPredicted RBP8.24□□□□□ -1.09
CHD3-201ENST00000330494 A0A087WWL8 130 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 OVOL3O00110 214 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 NPSP0C0P6 89 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 RNASE2P10153 161 aaKnown RBP8.23□□□□□ -1.09
CHD3-201ENST00000330494 MCRIP2Q9BUT9 160 aaKnown RBP8.23□□□□□ -1.09
CHD3-201ENST00000330494 REG4Q9BYZ8 158 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 CHTOPQ9Y3Y2 248 aaKnown RBP8.23□□□□□ -1.09
CHD3-201ENST00000330494 TSKUQ8WUA8 353 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 ZNF138P52744 262 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 CD300EQ496F6 205 aaPredicted RBP8.23□□□□□ -1.09
CHD3-201ENST00000330494 LINC00477Q96M19 166 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 SPTAN1Q13813 2472 aaKnown RBP8.23□□□□□ -1.09
CHD3-201ENST00000330494 TRGV11A0A075B6L2 103 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 DIAPH2-AS1Q14236 149 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 TMEM14EPQ6UXP3 125 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 CST9LQ9H4G1 147 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 DPM2O94777 84 aa8.23□□□□□ -1.09
CHD3-201ENST00000330494 ZNF48Q96MX3 618 aaPredicted RBP8.23□□□□□ -1.09
CHD3-201ENST00000330494 ADAMTSL5Q6ZMM2 481 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 RHPN1-AS1Q9BWJ2 59 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 TPSG1Q9NRR2 321 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 ZNF106Q9H2Y7 1883 aaKnown RBP8.22□□□□□ -1.09
CHD3-201ENST00000330494 NDUFS7O75251 213 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 IGKCP01834 107 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 HBDP02042 147 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 CRPP02741 224 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 ARHGAP21Q5T5U3 1957 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 MMP23AO75900 390 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 TMEM256Q8N2U0 113 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 C14orf178Q8N769 122 aaPredicted RBP8.22□□□□□ -1.09
CHD3-201ENST00000330494 MED13LQ71F56 2210 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 NOTCH3Q9UM47 2321 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 ZNF876PQ49A33 203 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 C3orf56Q8N813 242 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 NUP35Q8NFH5 326 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 VGLL1Q99990 258 aa8.22□□□□□ -1.09
CHD3-201ENST00000330494 GNB1LQ9BYB4 327 aa8.21□□□□□ -1.09
CHD3-201ENST00000330494 C17orf58Q2M2W7 97 aa8.21□□□□□ -1.09
CHD3-201ENST00000330494 FAM120AOSQ5T036 256 aa8.21□□□□□ -1.09
CHD3-201ENST00000330494 BCL6BQ8N143 479 aaPredicted RBP8.21□□□□□ -1.09
CHD3-201ENST00000330494 C8orf49Q96NF6 230 aa8.21□□□□□ -1.09
CHD3-201ENST00000330494 PCDH15Q96QU1 1955 aa8.21□□□□□ -1.09
CHD3-201ENST00000330494 TRBV6-6A0A0A6YYG2 114 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 CD5P06127 495 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 PSG3Q16557 428 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 EML6Q6ZMW3 1958 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 F2Z2F3 143 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 DKK1O94907 266 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms