RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 ASCL2Q99929 193 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 SOX21Q9Y651 276 aaPredicted RBP12.67□□□□□ -0.38
USHBP1-202ENST00000324554 VPS13CQ709C8 3753 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 IGHV1-24A0A0C4DH33 117 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 OVOL3O00110 214 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 COL8A1P27658 744 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 KLRD1Q13241 179 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 FBLN7Q53RD9 439 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 C17orf77Q96MU5 243 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 TMEM70Q9BUB7 260 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 USP9XQ93008 2570 aaPredicted RBP12.67□□□□□ -0.38
USHBP1-202ENST00000324554 MYO18BQ8IUG5 2567 aa12.66□□□□□ -0.38
USHBP1-202ENST00000324554 NDUFA3O95167 84 aa12.66□□□□□ -0.38
USHBP1-202ENST00000324554 APOHP02749 345 aaPredicted RBP12.66□□□□□ -0.38
USHBP1-202ENST00000324554 HOXB4P17483 251 aaPredicted RBP12.66□□□□□ -0.38
USHBP1-202ENST00000324554 HINT1P49773 126 aaPredicted RBP12.66□□□□□ -0.38
USHBP1-202ENST00000324554 NPBQ8NG41 125 aa12.66□□□□□ -0.38
USHBP1-202ENST00000324554 SHANK2-AS3Q9BTD1 123 aa12.66□□□□□ -0.38
USHBP1-202ENST00000324554 TP73-AS1Q9UF72 201 aa12.66□□□□□ -0.38
USHBP1-202ENST00000324554 TIMD4Q96H15 378 aa12.66□□□□□ -0.38
USHBP1-202ENST00000324554 MRPS16Q9Y3D3 137 aaKnown RBP12.66□□□□□ -0.38
USHBP1-202ENST00000324554 CSMD1Q96PZ7 3565 aa12.66□□□□□ -0.38
USHBP1-202ENST00000324554 LOC102724200A0A096LPH7 203 aaPredicted RBP12.65□□□□□ -0.38
USHBP1-202ENST00000324554 ODF3BA8MYP8 253 aa12.65□□□□□ -0.38
USHBP1-202ENST00000324554 H3BRN7 92 aa12.65□□□□□ -0.38
USHBP1-202ENST00000324554 LINC00614P0C842 121 aa12.65□□□□□ -0.38
USHBP1-202ENST00000324554 ZNF491Q8N8L2 437 aa12.65□□□□□ -0.38
USHBP1-202ENST00000324554 MAP1AP78559 2803 aaPredicted RBP12.65□□□□□ -0.39
USHBP1-202ENST00000324554 ZNF462Q96JM2 2506 aa12.65□□□□□ -0.39
USHBP1-202ENST00000324554 TRBV19A0A075B6N1 114 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 CEACAM3P40198 252 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 ZNF138P52744 262 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 KLF17Q5JT82 389 aaPredicted RBP12.64□□□□□ -0.39
USHBP1-202ENST00000324554 DMRTA1Q5VZB9 504 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 C11orf71Q6IPW1 123 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 Q6ZVH6 145 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 BPIFA4PQ86YQ2 179 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 OR4F17Q8NGA8 305 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 FAM231BA6NCW3 169 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 M0R1W7 72 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 CRXO43186 299 aaPredicted RBP12.64□□□□□ -0.39
USHBP1-202ENST00000324554 C16orf54Q6UWD8 224 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 CHCHD1Q96BP2 118 aaKnown RBP12.64□□□□□ -0.39
USHBP1-202ENST00000324554 ZC2HC1AQ96GY0 325 aa12.64□□□□□ -0.39
USHBP1-202ENST00000324554 LOC105371242A0A075B767 164 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 CHEK1O14757 476 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 IL4P05112 153 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 RNF125Q96EQ8 232 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 NDFIP1Q9BT67 221 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 A0A1W2PRD5 423 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 A0A1W2PRF3 423 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 A0A1W2PRM7 423 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 C20orf202A1L168 122 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 OR4C46A6NHA9 309 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 SYS1-DBNDD2H3BUS1 97 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 PRTN3P24158 256 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 HES1Q14469 280 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 C5orf64Q2M2E5 130 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 SIGLEC15Q6ZMC9 328 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 S4R3C0 116 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 CSMD2Q7Z408 3487 aa12.63□□□□□ -0.39
USHBP1-202ENST00000324554 TRBV6-1A0A0K0K1D8 114 aa12.62□□□□□ -0.39
USHBP1-202ENST00000324554 HAX1O00165 279 aa12.62□□□□□ -0.39
USHBP1-202ENST00000324554 LEPROTL1O95214 131 aa12.62□□□□□ -0.39
USHBP1-202ENST00000324554 FAM162BQ5T6X4 162 aa12.62□□□□□ -0.39
USHBP1-202ENST00000324554 MRPS12O15235 138 aaKnown RBP12.62□□□□□ -0.39
USHBP1-202ENST00000324554 HLA-DRB1P01911 266 aa12.62□□□□□ -0.39
USHBP1-202ENST00000324554 UNQ5815/PRO19632Q6UWF5 114 aa12.62□□□□□ -0.39
USHBP1-202ENST00000324554 TMEM75Q8N9X5 138 aa12.61□□□□□ -0.39
USHBP1-202ENST00000324554 FANCD2OSQ96PS1 177 aa12.61□□□□□ -0.39
USHBP1-202ENST00000324554 RNF24Q9Y225 148 aa12.61□□□□□ -0.39
USHBP1-202ENST00000324554 IGLV11-55A0A075B6I3 123 aa12.61□□□□□ -0.39
USHBP1-202ENST00000324554 WI2-2373I1.2A0A1W2PRP0 233 aa12.61□□□□□ -0.39
USHBP1-202ENST00000324554 ARMS2P0C7Q2 107 aa12.61□□□□□ -0.39
USHBP1-202ENST00000324554 BCL6BQ8N143 479 aaPredicted RBP12.61□□□□□ -0.39
USHBP1-202ENST00000324554 C1RLQ9NZP8 487 aa12.61□□□□□ -0.39
USHBP1-202ENST00000324554 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.6□□□□□ -0.39
USHBP1-202ENST00000324554 hDV102S1A0JD36 115 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 TCF21O43680 179 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 NEU4Q8WWR8 484 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-202ENST00000324554 TMEM190Q8WZ59 177 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 MCRIP2Q9BUT9 160 aaKnown RBP12.6□□□□□ -0.39
USHBP1-202ENST00000324554 NPIPB5A8MRT5 1133 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 GNG7O60262 68 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 FCGR2BP31994 310 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-202ENST00000324554 CRIP1P50238 77 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 NDPQ00604 133 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 DYNAPQ8N1N2 210 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 LYPD1Q8N2G4 141 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 ZNF414Q96IQ9 312 aa12.6□□□□□ -0.39
USHBP1-202ENST00000324554 CSN3P07498 182 aa12.59□□□□□ -0.39
USHBP1-202ENST00000324554 ZNF562Q6V9R5 426 aa12.59□□□□□ -0.39
USHBP1-202ENST00000324554 ARPC1AQ92747 370 aa12.59□□□□□ -0.39
USHBP1-202ENST00000324554 SPG11Q96JI7 2443 aa12.59□□□□□ -0.39
USHBP1-202ENST00000324554 TRAV30A0A087WSZ9 112 aa12.59□□□□□ -0.39
USHBP1-202ENST00000324554 A0A1B0GUT8 65 aa12.59□□□□□ -0.39
USHBP1-202ENST00000324554 F8W735 103 aaPredicted RBP12.59□□□□□ -0.39
USHBP1-202ENST00000324554 M0R3E3 92 aa12.59□□□□□ -0.39
USHBP1-202ENST00000324554 DTX2Q86UW9 622 aa12.59□□□□□ -0.39
USHBP1-202ENST00000324554 TMUB1Q9BVT8 246 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms