RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 IGHV2-70DA0A0C4DH43 119 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 PRB4P10163 310 aaPredicted RBP15.61■□□□□ 0.09
USP48-201ENST00000308271 JMJD8Q96S16 334 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 NUP210Q8TEM1 1887 aaPredicted RBP15.61■□□□□ 0.09
USP48-201ENST00000308271 TMEM158Q8WZ71 300 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 CEACAM4O75871 244 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 LGALS9BQ3B8N2 356 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 FAM104BQ5XKR9 115 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 LGALS9CQ6DKI2 356 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 TMEM75Q8N9X5 138 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 K7EP34 96 aa15.6■□□□□ 0.09
USP48-201ENST00000308271 ZNF134P52741 427 aa15.6■□□□□ 0.09
USP48-201ENST00000308271 CFHR2P36980 270 aa15.6■□□□□ 0.09
USP48-201ENST00000308271 CKS1BP61024 79 aa15.6■□□□□ 0.09
USP48-201ENST00000308271 C17orf58Q2M2W7 97 aa15.6■□□□□ 0.09
USP48-201ENST00000308271 LINC01560Q8TB33 94 aa15.6■□□□□ 0.09
USP48-201ENST00000308271 CD24P25063 80 aa15.59■□□□□ 0.09
USP48-201ENST00000308271 DEFB125Q8N687 156 aa15.59■□□□□ 0.09
USP48-201ENST00000308271 DLX4Q92988 240 aaPredicted RBP15.59■□□□□ 0.09
USP48-201ENST00000308271 CADP27708 2225 aa15.59■□□□□ 0.09
USP48-201ENST00000308271 USF3Q68DE3 2245 aa15.59■□□□□ 0.09
USP48-201ENST00000308271 LY6G6EA0A0G2JKS1 128 aa15.59■□□□□ 0.09
USP48-201ENST00000308271 SMKR1H3BMG3 65 aa15.59■□□□□ 0.09
USP48-201ENST00000308271 CHD3Q12873 2000 aaKnown RBP15.59■□□□□ 0.09
USP48-201ENST00000308271 U3KQA8 63 aa15.59■□□□□ 0.09
USP48-201ENST00000308271 SNRPD3P62318 126 aaKnown RBP15.58■□□□□ 0.09
USP48-201ENST00000308271 Q6ZVH6 145 aa15.58■□□□□ 0.09
USP48-201ENST00000308271 RHOGP84095 191 aa15.58■□□□□ 0.08
USP48-201ENST00000308271 C19orf54Q5BKX5 351 aa15.58■□□□□ 0.08
USP48-201ENST00000308271 FXYD5Q96DB9 178 aa15.58■□□□□ 0.08
USP48-201ENST00000308271 SRSF8Q9BRL6 282 aaKnown RBP15.58■□□□□ 0.08
USP48-201ENST00000308271 DOPEY2Q9Y3R5 2298 aa15.58■□□□□ 0.08
USP48-201ENST00000308271 Q8TAT8 98 aa15.58■□□□□ 0.08
USP48-201ENST00000308271 FAM168AQ92567 244 aa15.58■□□□□ 0.08
USP48-201ENST00000308271 NEU4Q8WWR8 484 aaPredicted RBP15.58■□□□□ 0.08
USP48-201ENST00000308271 NOTCH2Q04721 2471 aa15.58■□□□□ 0.08
USP48-201ENST00000308271 RNASE4P34096 147 aaKnown RBP15.57■□□□□ 0.08
USP48-201ENST00000308271 CD300EQ496F6 205 aaPredicted RBP15.57■□□□□ 0.08
USP48-201ENST00000308271 ZNF833PQ6ZTB9 187 aa15.57■□□□□ 0.08
USP48-201ENST00000308271 PRSS46E5RG02 174 aa15.57■□□□□ 0.08
USP48-201ENST00000308271 MBD3L4A6NDZ8 208 aaPredicted RBP15.56■□□□□ 0.08
USP48-201ENST00000308271 MBD3L3A6NE82 208 aaPredicted RBP15.56■□□□□ 0.08
USP48-201ENST00000308271 MBD3L5A6NJ08 208 aaPredicted RBP15.56■□□□□ 0.08
USP48-201ENST00000308271 GATA4P43694 442 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 MBD3L2Q8NHZ7 208 aaPredicted RBP15.56■□□□□ 0.08
USP48-201ENST00000308271 ZNRD1Q9P1U0 126 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 TMEM213A2RRL7 107 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 YLPM1P49750 1951 aaKnown RBP15.56■□□□□ 0.08
USP48-201ENST00000308271 TSPAN13O95857 204 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 WT1-ASQ06250 92 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 ZNF562Q6V9R5 426 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 C10orf126Q8N4M7 172 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 MEIG1Q5JSS6 88 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 NUP37Q8NFH4 326 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 DDB2Q92466 427 aa15.56■□□□□ 0.08
USP48-201ENST00000308271 DYNLRB2Q8TF09 96 aa15.55■□□□□ 0.08
USP48-201ENST00000308271 TRBV19A0A075B6N1 114 aa15.55■□□□□ 0.08
USP48-201ENST00000308271 CRXO43186 299 aaPredicted RBP15.55■□□□□ 0.08
USP48-201ENST00000308271 TNFRSF6BO95407 300 aa15.55■□□□□ 0.08
USP48-201ENST00000308271 MRAP2Q96G30 205 aa15.55■□□□□ 0.08
USP48-201ENST00000308271 DTX1Q86Y01 620 aa15.55■□□□□ 0.08
USP48-201ENST00000308271 THAP8Q8NA92 274 aa15.55■□□□□ 0.08
USP48-201ENST00000308271 CEACAM8P31997 349 aaPredicted RBP15.54■□□□□ 0.08
USP48-201ENST00000308271 BUB1B-PAK6H3BSN5 160 aa15.54■□□□□ 0.08
USP48-201ENST00000308271 SIVA1O15304 175 aa15.54■□□□□ 0.08
USP48-201ENST00000308271 RNASE8Q8TDE3 154 aaKnown RBP15.54■□□□□ 0.08
USP48-201ENST00000308271 TMEM14CQ9P0S9 112 aa15.54■□□□□ 0.08
USP48-201ENST00000308271 ODF3L1Q8IXM7 274 aa15.54■□□□□ 0.08
USP48-201ENST00000308271 CD59P13987 128 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 TNFRSF18Q9Y5U5 241 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 A0A1W2PPM0 123 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 GAGE2BQ13066 116 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 GAGE2EQ4V326 116 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 ZFAND6Q6FIF0 208 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 PGPEP1Q9NXJ5 209 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 GAGE2DQ9UEU5 116 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 LYNX1G3V0Z9 82 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 LYNX1P0DP58 116 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 ERG28Q9UKR5 140 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 PIEZO1Q92508 2521 aa15.53■□□□□ 0.08
USP48-201ENST00000308271 SRCAPQ6ZRS2 3230 aa15.52■□□□□ 0.08
USP48-201ENST00000308271 OVOL1O14753 267 aa15.52■□□□□ 0.08
USP48-201ENST00000308271 C5orf64Q2M2E5 130 aa15.52■□□□□ 0.08
USP48-201ENST00000308271 ZNF747Q9BV97 191 aa15.52■□□□□ 0.08
USP48-201ENST00000308271 SIGLEC8Q9NYZ4 499 aa15.52■□□□□ 0.08
USP48-201ENST00000308271 KIAA1549LQ6ZVL6 1849 aa15.52■□□□□ 0.08
USP48-201ENST00000308271 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.52■□□□□ 0.08
USP48-201ENST00000308271 IGKV3-20P01619 116 aa15.52■□□□□ 0.08
USP48-201ENST00000308271 TRAV40A0A0B4J280 105 aa15.51■□□□□ 0.07
USP48-201ENST00000308271 LY6EQ16553 131 aa15.51■□□□□ 0.07
USP48-201ENST00000308271 TRAV2A0A0B4J234 112 aa15.51■□□□□ 0.07
USP48-201ENST00000308271 SRRM4A7MD48 611 aaKnown RBP15.51■□□□□ 0.07
USP48-201ENST00000308271 NPFFO15130 113 aa15.51■□□□□ 0.07
USP48-201ENST00000308271 MRPL51Q4U2R6 128 aaKnown RBP15.51■□□□□ 0.07
USP48-201ENST00000308271 ASPHD1Q5U4P2 390 aa15.51■□□□□ 0.07
USP48-201ENST00000308271 F8W1H4 67 aa15.51■□□□□ 0.07
USP48-201ENST00000308271 DNAL4O96015 105 aa15.51■□□□□ 0.07
USP48-201ENST00000308271 LTAP01374 205 aa15.51■□□□□ 0.07
USP48-201ENST00000308271 Q8TCH9 128 aa15.51■□□□□ 0.07
USP48-201ENST00000308271 TMEM8BA6NDV4 472 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms