RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TRAV30A0A087WSZ9 112 aa15.71■□□□□ 0.1
VPS53-201ENST00000291074 KIR2DL5BA0A0G2JN68 375 aa15.71■□□□□ 0.1
VPS53-201ENST00000291074 KIR2DL5BA0A0G2JPC4 375 aa15.71■□□□□ 0.1
VPS53-201ENST00000291074 ZNF324O75467 553 aaPredicted RBP15.71■□□□□ 0.1
VPS53-201ENST00000291074 SAA4P35542 130 aa15.71■□□□□ 0.1
VPS53-201ENST00000291074 KIR2DL5AQ8N109 375 aa15.71■□□□□ 0.1
VPS53-201ENST00000291074 IGHV3-35A0A0C4DH35 117 aa15.7■□□□□ 0.1
VPS53-201ENST00000291074 NTF3P20783 257 aa15.7■□□□□ 0.1
VPS53-201ENST00000291074 ATP5L2Q7Z4Y8 100 aa15.7■□□□□ 0.1
VPS53-201ENST00000291074 CFAP46Q8IYW2 2715 aa15.7■□□□□ 0.1
VPS53-201ENST00000291074 SH2D7A6NKC9 451 aaPredicted RBP15.7■□□□□ 0.1
VPS53-201ENST00000291074 HBBP68871 147 aa15.7■□□□□ 0.1
VPS53-201ENST00000291074 CT83Q5H943 113 aa15.7■□□□□ 0.1
VPS53-201ENST00000291074 ALKBH7Q9BT30 221 aaPredicted RBP15.7■□□□□ 0.1
VPS53-201ENST00000291074 UBE2E1P51965 193 aa15.69■□□□□ 0.1
VPS53-201ENST00000291074 TEX43Q6ZNM6 134 aa15.69■□□□□ 0.1
VPS53-201ENST00000291074 NIT1Q86X76 327 aa15.69■□□□□ 0.1
VPS53-201ENST00000291074 ZNF48Q96MX3 618 aaPredicted RBP15.69■□□□□ 0.1
VPS53-201ENST00000291074 NPIPB6E9PJ23 425 aa15.69■□□□□ 0.1
VPS53-201ENST00000291074 ECSCRQ19T08 205 aa15.69■□□□□ 0.1
VPS53-201ENST00000291074 Q8N976 141 aa15.69■□□□□ 0.1
VPS53-201ENST00000291074 FAM106CPP0CH98 169 aa15.68■□□□□ 0.1
VPS53-201ENST00000291074 PSG8Q9UQ74 426 aa15.68■□□□□ 0.1
VPS53-201ENST00000291074 PAM16Q9Y3D7 125 aa15.68■□□□□ 0.1
VPS53-201ENST00000291074 PIEZO1Q92508 2521 aa15.68■□□□□ 0.1
VPS53-201ENST00000291074 RBPMS2Q6ZRY4 209 aaKnown RBP15.68■□□□□ 0.1
VPS53-201ENST00000291074 TMEM75Q8N9X5 138 aa15.68■□□□□ 0.1
VPS53-201ENST00000291074 TMUB1Q9BVT8 246 aa15.68■□□□□ 0.1
VPS53-201ENST00000291074 THYN1Q9P016 225 aa15.68■□□□□ 0.1
VPS53-201ENST00000291074 RNF24Q9Y225 148 aa15.68■□□□□ 0.1
VPS53-201ENST00000291074 CTSGP08311 255 aa15.67■□□□□ 0.1
VPS53-201ENST00000291074 DIRC3C9JPN6 131 aa15.67■□□□□ 0.1
VPS53-201ENST00000291074 NPSP0C0P6 89 aa15.67■□□□□ 0.1
VPS53-201ENST00000291074 FOXA3P55318 350 aaPredicted RBP15.67■□□□□ 0.1
VPS53-201ENST00000291074 PIP4P2Q8N4L2 257 aa15.67■□□□□ 0.1
VPS53-201ENST00000291074 PSG3Q16557 428 aa15.66■□□□□ 0.1
VPS53-201ENST00000291074 ATP6V0E1O15342 81 aa15.66■□□□□ 0.1
VPS53-201ENST00000291074 LYPD1Q8N2G4 141 aa15.66■□□□□ 0.1
VPS53-201ENST00000291074 C8orf49Q96NF6 230 aa15.66■□□□□ 0.1
VPS53-201ENST00000291074 PCP4P48539 62 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 KLF5Q13887 457 aaPredicted RBP15.65■□□□□ 0.1
VPS53-201ENST00000291074 RNASEKQ6P5S7 137 aaKnown RBP15.65■□□□□ 0.1
VPS53-201ENST00000291074 UNQ5815/PRO19632Q6UWF5 114 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 GFRA4Q9GZZ7 299 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 C1RLQ9NZP8 487 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 MAP1AP78559 2803 aaPredicted RBP15.65■□□□□ 0.1
VPS53-201ENST00000291074 IGHV3OR16-10A0A075B7F0 116 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 TRBV6-1A0A0K0K1D8 114 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 LINC01548A6NM66 108 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 M0QZ24 198 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 IGHV4-39P01824 125 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 CRIP1P50238 77 aa15.65■□□□□ 0.1
VPS53-201ENST00000291074 C3orf79P0CE67 100 aa15.64■□□□□ 0.09
VPS53-201ENST00000291074 C16orf54Q6UWD8 224 aa15.64■□□□□ 0.09
VPS53-201ENST00000291074 K7EQM0 130 aa15.64■□□□□ 0.09
VPS53-201ENST00000291074 OVOL3O00110 214 aa15.64■□□□□ 0.09
VPS53-201ENST00000291074 GPR183P32249 361 aa15.64■□□□□ 0.09
VPS53-201ENST00000291074 IGFL4Q6B9Z1 124 aa15.64■□□□□ 0.09
VPS53-201ENST00000291074 VAMP8Q9BV40 100 aa15.64■□□□□ 0.09
VPS53-201ENST00000291074 AAMDCQ9H7C9 122 aa15.64■□□□□ 0.09
VPS53-201ENST00000291074 HSBP1O75506 76 aa15.63■□□□□ 0.09
VPS53-201ENST00000291074 C15orf32Q32M92 178 aa15.63■□□□□ 0.09
VPS53-201ENST00000291074 OR4B1Q8NGF8 309 aa15.63■□□□□ 0.09
VPS53-201ENST00000291074 URB1-AS1Q96HZ7 61 aa15.63■□□□□ 0.09
VPS53-201ENST00000291074 ZFP30Q9Y2G7 519 aa15.63■□□□□ 0.09
VPS53-201ENST00000291074 G3V318 75 aa15.63■□□□□ 0.09
VPS53-201ENST00000291074 TMEM208Q9BTX3 173 aa15.63■□□□□ 0.09
VPS53-201ENST00000291074 PPP1R14DQ9NXH3 145 aa15.63■□□□□ 0.09
VPS53-201ENST00000291074 SOX21Q9Y651 276 aaPredicted RBP15.63■□□□□ 0.09
VPS53-201ENST00000291074 FLNCQ14315 2725 aa15.62■□□□□ 0.09
VPS53-201ENST00000291074 IGKV2-40A0A087WW87 121 aaPredicted RBP15.62■□□□□ 0.09
VPS53-201ENST00000291074 NPFFO15130 113 aa15.62■□□□□ 0.09
VPS53-201ENST00000291074 IGKV2D-40P01614 121 aaPredicted RBP15.62■□□□□ 0.09
VPS53-201ENST00000291074 APOHP02749 345 aaPredicted RBP15.62■□□□□ 0.09
VPS53-201ENST00000291074 PDE6HQ13956 83 aa15.62■□□□□ 0.09
VPS53-201ENST00000291074 FAM110DQ8TAY7 271 aaPredicted RBP15.62■□□□□ 0.09
VPS53-201ENST00000291074 HLA-DMBP28068 263 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 RHOGP84095 191 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 S100A7AQ86SG5 101 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 RABAC1Q9UI14 185 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 SMAD5-AS1Q9Y6J3 95 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 CACNA1AO00555 2505 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 SPG11Q96JI7 2443 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 CENPVL3A0A0U1RRI6 287 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 FAM231BA6NCW3 169 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 M0R143 59 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 CHEK1O14757 476 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 ARMS2P0C7Q2 107 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 TMEM219Q86XT9 240 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 C20orf144Q9BQM9 153 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 GOLT1BQ9Y3E0 138 aa15.61■□□□□ 0.09
VPS53-201ENST00000291074 M0R2Z0 102 aa15.6■□□□□ 0.09
VPS53-201ENST00000291074 RPL7P18124 248 aaKnown RBP15.6■□□□□ 0.09
VPS53-201ENST00000291074 PMCHL1Q16048 86 aa15.6■□□□□ 0.09
VPS53-201ENST00000291074 ZNF705AQ6ZN79 300 aaPredicted RBP15.6■□□□□ 0.09
VPS53-201ENST00000291074 ZNF502Q8TBZ5 544 aa15.6■□□□□ 0.09
VPS53-201ENST00000291074 BORCS7Q96B45 105 aa15.6■□□□□ 0.09
VPS53-201ENST00000291074 TPPP3Q9BW30 176 aa15.6■□□□□ 0.09
VPS53-201ENST00000291074 LCN12Q6JVE5 192 aa15.6■□□□□ 0.09
VPS53-201ENST00000291074 IGSF10Q6WRI0 2623 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms