RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 RBMY1CP0DJD4 496 aa13.4□□□□□ -0.26
SH3RF1-201ENST00000284637 PAX9P55771 341 aa13.4□□□□□ -0.26
SH3RF1-201ENST00000284637 KLRD1Q13241 179 aa13.4□□□□□ -0.26
SH3RF1-201ENST00000284637 LIME1Q9H400 295 aa13.4□□□□□ -0.26
SH3RF1-201ENST00000284637 DOCK8Q8NF50 2099 aa13.4□□□□□ -0.26
SH3RF1-201ENST00000284637 NPC2P61916 151 aa13.4□□□□□ -0.26
SH3RF1-201ENST00000284637 PPDPFLQ8WWR9 84 aa13.4□□□□□ -0.26
SH3RF1-201ENST00000284637 SPAG8Q99932 426 aaPredicted RBP13.4□□□□□ -0.26
SH3RF1-201ENST00000284637 MED13LQ71F56 2210 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 THBDP07204 575 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 WNT2P09544 360 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 RNASE2P10153 161 aaKnown RBP13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 C1orf147Q96MC9 270 aaPredicted RBP13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 SCN5AQ14524 2016 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 ZNF672Q499Z4 452 aaPredicted RBP13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 SLC25A15Q9Y619 301 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 PCNX1Q96RV3 2341 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 SRSF6Q13247 344 aaKnown RBP13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 ATXN8Q156A1 80 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 DPH3Q96FX2 82 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 OVOL1O14753 267 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 HTN3P15516 51 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 SLAQ13239 276 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 ZNF329Q86UD4 541 aa13.39□□□□□ -0.27
SH3RF1-201ENST00000284637 SBF1O95248 1867 aa13.38□□□□□ -0.27
SH3RF1-201ENST00000284637 TMEM178BH3BS89 294 aa13.38□□□□□ -0.27
SH3RF1-201ENST00000284637 TMEM158Q8WZ71 300 aa13.38□□□□□ -0.27
SH3RF1-201ENST00000284637 NDPQ00604 133 aa13.38□□□□□ -0.27
SH3RF1-201ENST00000284637 TMEM219Q86XT9 240 aa13.38□□□□□ -0.27
SH3RF1-201ENST00000284637 CYYR1Q96J86 154 aa13.38□□□□□ -0.27
SH3RF1-201ENST00000284637 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.38□□□□□ -0.27
SH3RF1-201ENST00000284637 FOXL2NBQ6ZUU3 175 aa13.38□□□□□ -0.27
SH3RF1-201ENST00000284637 GAFA1Q96PS6 74 aa13.38□□□□□ -0.27
SH3RF1-201ENST00000284637 CFAP161Q6P656 301 aa13.37□□□□□ -0.27
SH3RF1-201ENST00000284637 YAE1D1Q9NRH1 226 aa13.37□□□□□ -0.27
SH3RF1-201ENST00000284637 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.37□□□□□ -0.27
SH3RF1-201ENST00000284637 V9GYV3 84 aa13.37□□□□□ -0.27
SH3RF1-201ENST00000284637 TNFRSF6BO95407 300 aa13.37□□□□□ -0.27
SH3RF1-201ENST00000284637 ZNRD1Q9P1U0 126 aa13.37□□□□□ -0.27
SH3RF1-201ENST00000284637 LINC01549A6NIU2 74 aa13.37□□□□□ -0.27
SH3RF1-201ENST00000284637 DUSP14O95147 198 aaKnown RBP13.37□□□□□ -0.27
SH3RF1-201ENST00000284637 ZNF474Q6S9Z5 364 aaPredicted RBP13.37□□□□□ -0.27
SH3RF1-201ENST00000284637 TRAV40A0A0B4J280 105 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 ABCA4P78363 2273 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 HEATR5AQ86XA9 2040 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 TRAV41A0A0B4J266 112 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 M0R2P5 195 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 TOMM40O96008 361 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 SIGLEC9Q9Y336 463 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 IGHV3-73A0A0B4J1V6 119 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 ARMS2P0C7Q2 107 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 GAGE5Q13069 117 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 GAGE6Q13070 117 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 C2orf82Q6UX34 121 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 HAPLN4Q86UW8 402 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 GFRA4Q9GZZ7 299 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 SRRM4A7MD48 611 aaKnown RBP13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 ZNF876PQ49A33 203 aa13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 C14orf178Q8N769 122 aaPredicted RBP13.36□□□□□ -0.27
SH3RF1-201ENST00000284637 C9orf153Q5TBE3 101 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 STHQ8IWL8 128 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 ZNF114Q8NC26 417 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 ZNF524Q96C55 264 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 VGLL1Q99990 258 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 PEMTQ9UBM1 199 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 CD59P13987 128 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 TDRG1Q3Y452 100 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 TRBV20-1A0A075B6N2 111 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 GAGE12JA6NER3 117 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 GAGE7O76087 117 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 GAGE12FP0CL80 117 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 GAGE12GP0CL81 117 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 GAGE12IP0CL82 117 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 GAGE4Q13068 117 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 Q86TA4 180 aa13.35□□□□□ -0.27
SH3RF1-201ENST00000284637 TCF20Q9UGU0 1960 aaKnown RBP13.34□□□□□ -0.27
SH3RF1-201ENST00000284637 ZNF562Q6V9R5 426 aa13.34□□□□□ -0.27
SH3RF1-201ENST00000284637 RCHY1Q96PM5 261 aa13.34□□□□□ -0.27
SH3RF1-201ENST00000284637 C9JAW5 83 aa13.34□□□□□ -0.27
SH3RF1-201ENST00000284637 C5orf64Q2M2E5 130 aa13.34□□□□□ -0.27
SH3RF1-201ENST00000284637 LCNL1Q6ZST4 164 aa13.34□□□□□ -0.27
SH3RF1-201ENST00000284637 TRGV11A0A075B6L2 103 aa13.33□□□□□ -0.27
SH3RF1-201ENST00000284637 IGHV1-24A0A0C4DH33 117 aa13.33□□□□□ -0.27
SH3RF1-201ENST00000284637 SAP30O75446 220 aa13.33□□□□□ -0.27
SH3RF1-201ENST00000284637 VMO1Q7Z5L0 202 aa13.33□□□□□ -0.27
SH3RF1-201ENST00000284637 SPACA3Q8IXA5 215 aa13.33□□□□□ -0.27
SH3RF1-201ENST00000284637 C11orf44Q8N8P7 122 aa13.33□□□□□ -0.27
SH3RF1-201ENST00000284637 ZNF688P0C7X2 276 aa13.33□□□□□ -0.28
SH3RF1-201ENST00000284637 IFITM1P13164 125 aa13.33□□□□□ -0.28
SH3RF1-201ENST00000284637 LYPD2Q6UXB3 125 aa13.33□□□□□ -0.28
SH3RF1-201ENST00000284637 EDA2RQ9HAV5 297 aa13.33□□□□□ -0.28
SH3RF1-201ENST00000284637 CHD3Q12873 2000 aaKnown RBP13.33□□□□□ -0.28
SH3RF1-201ENST00000284637 THADAQ6YHU6 1953 aa13.33□□□□□ -0.28
SH3RF1-201ENST00000284637 C1orf122Q6ZSJ8 110 aa13.33□□□□□ -0.28
SH3RF1-201ENST00000284637 BUB1B-PAK6H3BSN5 160 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 MALP21145 153 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 DPH3P1Q9H4G8 78 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 FNDC10F2Z333 226 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 SIVA1O15304 175 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 PRSS22Q9GZN4 317 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms