RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 CEP295Q9C0D2 2601 aa10.46□□□□□ -0.74
NUP54-201ENST00000264883 IGHV3OR15-7A0A075B7D8 119 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 SUB1P53999 127 aaKnown RBP eCLIP10.45□□□□□ -0.74
NUP54-201ENST00000264883 DEFB109BQ30KR1 87 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 UTF1Q5T230 341 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 AMTNQ6UX39 209 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 MOGAT3Q86VF5 341 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 SRSF12Q8WXF0 261 aaKnown RBP10.45□□□□□ -0.74
NUP54-201ENST00000264883 TMEM190Q8WZ59 177 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 RNF183Q96D59 192 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 SCNM1Q9BWG6 230 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 LINC00312Q9Y6C7 94 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 IGKV2D-26A0A0A0MRZ7 120 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 A0A1B0GW15 77 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 K7EMI3 77 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 GATA3P23771 443 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 Q86TA4 180 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 SYT8Q8NBV8 401 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 PIFOQ8TCI5 191 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 TTTY13Q9BZ97 58 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 NDUFA4L2Q9NRX3 87 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 PRO0461Q9UI25 63 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 RPUSD1Q9UJJ7 312 aaKnown RBP10.45□□□□□ -0.74
NUP54-201ENST00000264883 PSG8Q9UQ74 426 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 MSRB2Q9Y3D2 182 aa10.45□□□□□ -0.74
NUP54-201ENST00000264883 PRRC2CQ9Y520 2896 aaKnown RBP10.44□□□□□ -0.74
NUP54-201ENST00000264883 A0A1B0GWB2 263 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 D6R8Y8 96 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 APOMO95445 188 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 C9orf106Q8NAJ2 232 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 NPIPB3Q92617 1050 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 PGPEP1Q9NXJ5 209 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 RNF7Q9UBF6 113 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 ERG28Q9UKR5 140 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 PROCRQ9UNN8 238 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 SSUH2Q9Y2M2 353 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 SLC25A15Q9Y619 301 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 NDUFS7O75251 213 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 SAA1P0DJI8 122 aaPredicted RBP10.44□□□□□ -0.74
NUP54-201ENST00000264883 TMEM95Q3KNT9 176 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 FLYWCH2Q96CP2 140 aaKnown RBP10.44□□□□□ -0.74
NUP54-201ENST00000264883 CDIP1Q9H305 208 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 Q9H3A6 140 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 ZNF71Q9NQZ8 489 aaPredicted RBP10.44□□□□□ -0.74
NUP54-201ENST00000264883 TANC2Q9HCD6 1990 aa10.44□□□□□ -0.74
NUP54-201ENST00000264883 APC2O95996 2303 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 DOCK7Q96N67 2140 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 TRBV25-1A0A075B6N4 114 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 TRAV8-1A0A0A6YYK1 113 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 H3BTX0 84 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 IGHV3-48P01763 117 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 ORM2P19652 201 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 GLRXP35754 106 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 PSMG4Q5JS54 123 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 ZNF833PQ6ZTB9 187 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 PRNTQ86SH4 94 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 THAP8Q8NA92 274 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 PRELID3AQ96N28 172 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 DYSFO75923 2080 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 IGKV1D-37A0A075B6S9 117 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 hADV38S2A0JD32 116 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 C16orf97H3BN30 126 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 MT-ATP8P03928 68 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 FOXI1Q12951 378 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 KLRD1Q13241 179 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 TPPP3Q9BW30 176 aa10.43□□□□□ -0.74
NUP54-201ENST00000264883 ANKRD11Q6UB99 2663 aaPredicted RBP10.42□□□□□ -0.74
NUP54-201ENST00000264883 IGLV3-9A0A075B6K5 115 aa10.42□□□□□ -0.74
NUP54-201ENST00000264883 TRAV17A0A0B4J275 112 aa10.42□□□□□ -0.74
NUP54-201ENST00000264883 C12orf74Q32Q52 190 aa10.42□□□□□ -0.74
NUP54-201ENST00000264883 WFDC3Q8IUB2 231 aa10.42□□□□□ -0.74
NUP54-201ENST00000264883 LAMA5O15230 3695 aa10.42□□□□□ -0.74
NUP54-201ENST00000264883 URB1O60287 2271 aaKnown RBP10.42□□□□□ -0.74
NUP54-201ENST00000264883 MGAQ8IWI9 3026 aa10.42□□□□□ -0.74
NUP54-201ENST00000264883 NPIPB5A8MRT5 1133 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 PAX8Q06710 450 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 IGFL3Q6UXB1 125 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 TMEM167AQ8TBQ9 72 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 GAFA1Q96PS6 74 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 WI2-2373I1.2A0A1W2PRP0 233 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 IGKV1-16P04430 117 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 SRSF1Q07955 248 aaKnown RBP eCLIP10.41□□□□□ -0.747e-7■□□□□ 8.2
NUP54-201ENST00000264883 ZNF493Q6ZR52 646 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 Q71RC1 249 aaPredicted RBP10.41□□□□□ -0.74
NUP54-201ENST00000264883 ORMDL3Q8N138 153 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 HARBI1Q96MB7 349 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 C1QTNF4Q9BXJ3 329 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 U3KQK5 164 aa10.41□□□□□ -0.74
NUP54-201ENST00000264883 TNCP24821 2201 aa10.4□□□□□ -0.74
NUP54-201ENST00000264883 PPIFP30405 207 aaKnown RBP10.4□□□□□ -0.74
NUP54-201ENST00000264883 Q6ZUT4 128 aa10.4□□□□□ -0.74
NUP54-201ENST00000264883 DMXL2Q8TDJ6 3036 aa10.4□□□□□ -0.74
NUP54-201ENST00000264883 HHLA3Q9XRX5 114 aa10.4□□□□□ -0.74
NUP54-201ENST00000264883 SHISA9B4DS77 424 aa10.4□□□□□ -0.74
NUP54-201ENST00000264883 RRN3P1Q2M238 152 aa10.4□□□□□ -0.74
NUP54-201ENST00000264883 ACACAQ13085 2346 aa10.4□□□□□ -0.75
NUP54-201ENST00000264883 VSTM5A8MXK1 200 aa10.39□□□□□ -0.75
NUP54-201ENST00000264883 PRRG2O14669 202 aa10.39□□□□□ -0.75
NUP54-201ENST00000264883 SPRY3O43610 288 aa10.39□□□□□ -0.75
NUP54-201ENST00000264883 GP9P14770 177 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms