RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 SRSF2Q01130 221 aaKnown RBP3.62□□□□□ -1.83
SCN1A-210ENST00000635776 ORMDL3Q8N138 153 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 LINC00477Q96M19 166 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 HAX1O00165 279 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 KLF5Q13887 457 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-210ENST00000635776 C20orf144Q9BQM9 153 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 MED13Q9UHV7 2174 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 ARL3P36405 182 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 PATE2Q6UY27 113 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 CFHR4Q92496 578 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 UTRNP46939 3433 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 CUL9Q8IWT3 2517 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 NAV3Q8IVL0 2385 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 K7EIM0 57 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 GNLYP22749 145 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 SAA4P35542 130 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 DIAPH2-AS1Q14236 149 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 MLANAQ16655 118 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 C11orf42Q8N5U0 333 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 C16orf92Q96LL3 132 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 MAP1LC3AQ9H492 121 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 C7orf69Q9H7B7 122 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 CBY3A6NI87 242 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 PAX8Q06710 450 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 C15orf32Q32M92 178 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 NUP35Q8NFH5 326 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 FAM122AQ96E09 287 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 IGKV1D-37A0A075B6S9 117 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 BRI3O95415 125 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 GPR183P32249 361 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 MYCNOSP40205 109 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 FOXA3P55318 350 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-210ENST00000635776 FER1L6-AS1Q8NA97 138 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 MIEN1Q9BRT3 115 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 BPESC1Q9GZL8 116 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.61□□□□□ -1.838e-7■■■■□ 21.2
SCN1A-210ENST00000635776 TRBV20OR9-2A0A075B6H5 130 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 IGKV1-17P01599 117 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 C1orf229Q6ZS94 237 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-210ENST00000635776 ITLN2Q8WWU7 325 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-210ENST00000635776 NXT2Q9NPJ8 142 aaKnown RBP3.61□□□□□ -1.83
SCN1A-210ENST00000635776 TTC28Q96AY4 2481 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 TRANK1O15050 2925 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 TRAV34A0A0B4J273 112 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 TCAPO15273 167 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 ZNF414Q96IQ9 312 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 NRN1Q9NPD7 142 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 TRBV7-9A0A0J9YWB2 115 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 NDUFA4O00483 81 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 MSMBP08118 114 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 SMIM17P0DL12 118 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 HOXB4P17483 251 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-210ENST00000635776 PGLYRP4Q96LB8 373 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 SMPXQ9UHP9 88 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 A0A087X0K7 114 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 NPFFR1Q9GZQ6 430 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 TPSG1Q9NRR2 321 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 ZNRD1Q9P1U0 126 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 GRIFINA4D1Z8 144 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 APELAP0DMC3 54 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 GZMBP10144 247 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 CKS2P33552 79 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 C12orf54Q6X4T0 127 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 PRSS22Q9GZN4 317 aa3.61□□□□□ -1.83
SCN1A-210ENST00000635776 PSMB11A5LHX3 300 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 K7EN84 100 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 LINC00614P0C842 121 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 MED12LQ86YW9 2145 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 Q8N6K4 173 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 MS4A6AQ9H2W1 248 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 PCSK5Q92824 1860 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 CENPVL3A0A0U1RRI6 287 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 LY6DQ14210 128 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 COL5A1-AS1Q5SY13 56 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 ST20Q9HBF5 79 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 CBY1Q9Y3M2 126 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 TRAV21A0A0B4J279 112 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 PF4V1P10720 104 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 ZNF138P52744 262 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 RPL11P62913 178 aaKnown RBP3.6□□□□□ -1.83
SCN1A-210ENST00000635776 GNG5P63218 68 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 ZNF580Q9UK33 172 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 LINC01356Q8N9X3 169 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 ZNF503Q96F45 646 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 LOC102724200A0A096LPH7 203 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-210ENST00000635776 DUSP14O95147 198 aaKnown RBP3.6□□□□□ -1.83
SCN1A-210ENST00000635776 IGHV3-48P01763 117 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 ZNF502Q8TBZ5 544 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 ABCA4P78363 2273 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 COTL1Q14019 142 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 LHFPL4Q7Z7J7 247 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 PRELID3AQ96N28 172 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 BEX4Q9NWD9 120 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-210ENST00000635776 SNRPD3P62318 126 aaKnown RBP3.6□□□□□ -1.83
SCN1A-210ENST00000635776 FOXE3Q13461 319 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 SPANXN1Q5VSR9 72 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 MBD6Q96DN6 1003 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 PRO1933Q9H354 126 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 TRAV9-2A0A087WT02 112 aa3.6□□□□□ -1.83
SCN1A-210ENST00000635776 ATP5LO75964 103 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms