RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 NBR2O15453 112 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 ZNF25P17030 456 aaPredicted RBP10.08□□□□□ -0.8
LINC00540-203ENST00000631321 HTR1DP28221 377 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 DMRTA1Q5VZB9 504 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 CIARTQ8N365 385 aaPredicted RBP10.08□□□□□ -0.8
LINC00540-203ENST00000631321 NDFIP1Q9BT67 221 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 LPAR2Q9HBW0 351 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 KALRNO60229 2985 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 MRPS12O15235 138 aaKnown RBP10.08□□□□□ -0.8
LINC00540-203ENST00000631321 G0S2P27469 103 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 COL8A1P27658 744 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 COL5A1-AS1Q5SY13 56 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 SIGLEC15Q6ZMC9 328 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 ZNF491Q8N8L2 437 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 OR4F17Q8NGA8 305 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 ZFP30Q9Y2G7 519 aa10.08□□□□□ -0.8
LINC00540-203ENST00000631321 POLEQ07864 2286 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 TRAV9-2A0A087WT02 112 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 LOC102724200A0A096LPH7 203 aaPredicted RBP10.07□□□□□ -0.8
LINC00540-203ENST00000631321 WI2-2373I1.2A0A1W2PRP0 233 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 ODF3BA8MYP8 253 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 CYB5R2Q6BCY4 276 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 PRNTQ86SH4 94 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 TMEM208Q9BTX3 173 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 FAM90A27PA6NNH2 459 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 M0R1W7 72 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 CRXO43186 299 aaPredicted RBP10.07□□□□□ -0.8
LINC00540-203ENST00000631321 GRNP28799 593 aaKnown RBP10.07□□□□□ -0.8
LINC00540-203ENST00000631321 GATD1Q8NB37 220 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 RNF125Q96EQ8 232 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 ZNF48Q96MX3 618 aaPredicted RBP10.07□□□□□ -0.8
LINC00540-203ENST00000631321 RAB1BQ9H0U4 201 aa10.07□□□□□ -0.8
LINC00540-203ENST00000631321 DLEU1O43261 78 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 HLA-DRB1P01911 266 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 CEACAM3P40198 252 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 Q6ZN92 141 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 TXN2Q99757 166 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 DMXL2Q8TDJ6 3036 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 HNRNPA3P51991 378 aaKnown RBP10.06□□□□□ -0.8
LINC00540-203ENST00000631321 FOXC1Q12948 553 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 Q71RC1 249 aaPredicted RBP10.06□□□□□ -0.8
LINC00540-203ENST00000631321 KIR3DL3Q8N743 410 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 ZC2HC1AQ96GY0 325 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 ZNF414Q96IQ9 312 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 C17orf77Q96MU5 243 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 TMEM70Q9BUB7 260 aa10.06□□□□□ -0.8
LINC00540-203ENST00000631321 MRPS16Q9Y3D3 137 aaKnown RBP10.06□□□□□ -0.8
LINC00540-203ENST00000631321 ABCA1O95477 2261 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 TRAV30A0A087WSZ9 112 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 NPIPB5A8MRT5 1133 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 C5orf64Q2M2E5 130 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 MAJINQ3KP22 176 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 Q56UQ5 140 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 SPATA12Q7Z6I5 190 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 ATOH7Q8N100 152 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 LAMTOR2Q9Y2Q5 125 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 TLN1Q9Y490 2541 aaKnown RBP10.05□□□□□ -0.8
LINC00540-203ENST00000631321 IGHV1-24A0A0C4DH33 117 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 K7EQM0 130 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 CHEK1O14757 476 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 IL4P05112 153 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 PRTN3P24158 256 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 ARF6P62330 175 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 PDE6HQ13956 83 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 BATFQ16520 125 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 PSG3Q16557 428 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 S100A7AQ86SG5 101 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 PSG8Q9UQ74 426 aa10.05□□□□□ -0.8
LINC00540-203ENST00000631321 MUC6Q6W4X9 2439 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 IGLV11-55A0A075B6I3 123 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 SH2D7A6NKC9 451 aaPredicted RBP10.04□□□□□ -0.8
LINC00540-203ENST00000631321 LINC00614P0C842 121 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 CD24P25063 80 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 TSPOP30536 169 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 PRR31Q5SQ13 230 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 TIMD4Q96H15 378 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 FANCD2OSQ96PS1 177 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 CLEC5AQ9NY25 188 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 HILPDAQ9Y5L2 63 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 ANKHD1Q8IWZ3 2542 aaKnown RBP10.04□□□□□ -0.8
LINC00540-203ENST00000631321 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.04□□□□□ -0.8
LINC00540-203ENST00000631321 A0A1B0GUT8 65 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 A0A1B0GW15 77 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 TOX4O94842 621 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 OR5AL1P0C617 328 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 C11orf71Q6IPW1 123 aa10.04□□□□□ -0.8
LINC00540-203ENST00000631321 LOC105371242A0A075B767 164 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 M0QZ24 198 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 IGLL1P15814 213 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 RIGQ13278 110 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 FBLN7Q53RD9 439 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 Q6AWC8 147 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 ZNF562Q6V9R5 426 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 F8W735 103 aaPredicted RBP10.03□□□□□ -0.8
LINC00540-203ENST00000631321 FCGR2BP31994 310 aaPredicted RBP10.03□□□□□ -0.8
LINC00540-203ENST00000631321 CRIP1P50238 77 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 MFAP4P55083 255 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 KLRD1Q13241 179 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 C1orf122Q6ZSJ8 110 aa10.03□□□□□ -0.8
LINC00540-203ENST00000631321 TTC9CQ8N5M4 171 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms