RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 C1orf159Q96HA4 380 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 RNF24Q9Y225 148 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 ITPR3Q14573 2671 aa12.39□□□□□ -0.43
CPSF1-213ENST00000620219 FBLN7Q53RD9 439 aa12.38□□□□□ -0.43
CPSF1-213ENST00000620219 RNASE7Q9H1E1 156 aaKnown RBP12.38□□□□□ -0.43
CPSF1-213ENST00000620219 TRAV8-1A0A0A6YYK1 113 aa12.38□□□□□ -0.43
CPSF1-213ENST00000620219 IBA57Q5T440 356 aaKnown RBP12.38□□□□□ -0.43
CPSF1-213ENST00000620219 FAM110DQ8TAY7 271 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-213ENST00000620219 NAGKQ9UJ70 344 aa12.38□□□□□ -0.43
CPSF1-213ENST00000620219 M0R3E3 92 aa12.38□□□□□ -0.43
CPSF1-213ENST00000620219 PPP1R2P9O14990 202 aa12.38□□□□□ -0.43
CPSF1-213ENST00000620219 CHRDL1Q9BU40 450 aa12.38□□□□□ -0.43
CPSF1-213ENST00000620219 SVEP1Q4LDE5 3571 aa12.38□□□□□ -0.43
CPSF1-213ENST00000620219 A0A0G2JLM5 398 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 NDUFA3O95167 84 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 HIST1H1EP10412 219 aaKnown RBP12.37□□□□□ -0.43
CPSF1-213ENST00000620219 GGCTO75223 188 aaKnown RBP12.37□□□□□ -0.43
CPSF1-213ENST00000620219 FAM106AQ4KMX7 169 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 LINC01551Q86U37 167 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 ANAPC16Q96DE5 110 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 CTDSP1Q9GZU7 261 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 CA1P00915 261 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-213ENST00000620219 C1QL4Q86Z23 238 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 SFRP2Q96HF1 295 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 IGKV1-17P01599 117 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 P01737 135 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 SRSF1Q07955 248 aaKnown RBP eCLIP12.37□□□□□ -0.435e-7■□□□□ 8.8
CPSF1-213ENST00000620219 OR4X2Q8NGF9 303 aa12.37□□□□□ -0.43
CPSF1-213ENST00000620219 SRSF8Q9BRL6 282 aaKnown RBP12.37□□□□□ -0.43
CPSF1-213ENST00000620219 I3L2K1 104 aa12.36□□□□□ -0.43
CPSF1-213ENST00000620219 A0A1W2PRE2 83 aa12.36□□□□□ -0.43
CPSF1-213ENST00000620219 C5orf56Q8N8D9 126 aa12.36□□□□□ -0.43
CPSF1-213ENST00000620219 C5orf17Q8NAS9 161 aa12.36□□□□□ -0.43
CPSF1-213ENST00000620219 TRAPPC1Q9Y5R8 145 aa12.36□□□□□ -0.43
CPSF1-213ENST00000620219 NPIPB5A8MRT5 1133 aa12.36□□□□□ -0.43
CPSF1-213ENST00000620219 GGTLC3B5MD39 225 aa12.36□□□□□ -0.43
CPSF1-213ENST00000620219 NAT8BQ9UHF3 227 aa12.36□□□□□ -0.43
CPSF1-213ENST00000620219 PATE2Q6UY27 113 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 SLC25A2Q9BXI2 301 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 CRYGBP07316 175 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 IER3P46695 156 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 OR2D3Q8NGH3 330 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 TTC9CQ8N5M4 171 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 SIGLECL1Q8N7X8 197 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 ZNF738Q8NE65 137 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 EPDR1Q9UM22 224 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 PSMB11A5LHX3 300 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 IGKV3-20P01619 116 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 ORM1P02763 201 aa12.35□□□□□ -0.43
CPSF1-213ENST00000620219 SERTM2A0A1B0GWG4 89 aa12.34□□□□□ -0.43
CPSF1-213ENST00000620219 TOMM20LQ6UXN7 152 aa12.34□□□□□ -0.43
CPSF1-213ENST00000620219 BAGE3Q86Y29 109 aa12.34□□□□□ -0.43
CPSF1-213ENST00000620219 FANCD2OSQ96PS1 177 aa12.34□□□□□ -0.43
CPSF1-213ENST00000620219 USF2Q15853 346 aaPredicted RBP12.34□□□□□ -0.43
CPSF1-213ENST00000620219 THAP8Q8NA92 274 aa12.34□□□□□ -0.43
CPSF1-213ENST00000620219 J3QLI3 93 aa12.34□□□□□ -0.43
CPSF1-213ENST00000620219 TOMM40O96008 361 aa12.34□□□□□ -0.43
CPSF1-213ENST00000620219 ISLRO14498 428 aa12.33□□□□□ -0.43
CPSF1-213ENST00000620219 TGOLN2O43493 480 aa12.33□□□□□ -0.43
CPSF1-213ENST00000620219 C17orf77Q96MU5 243 aa12.33□□□□□ -0.43
CPSF1-213ENST00000620219 C12orf57Q99622 126 aa12.33□□□□□ -0.43
CPSF1-213ENST00000620219 IGLV11-55A0A075B6I3 123 aa12.33□□□□□ -0.44
CPSF1-213ENST00000620219 A0A087WWC5 75 aa12.33□□□□□ -0.44
CPSF1-213ENST00000620219 TRGC1P0CF51 173 aa12.33□□□□□ -0.44
CPSF1-213ENST00000620219 TRBV20OR9-2A0A075B6H5 130 aa12.33□□□□□ -0.44
CPSF1-213ENST00000620219 IGHV4-31P0DP07 118 aa12.33□□□□□ -0.44
CPSF1-213ENST00000620219 ZNF491Q8N8L2 437 aa12.33□□□□□ -0.44
CPSF1-213ENST00000620219 KLK15Q9H2R5 256 aa12.33□□□□□ -0.44
CPSF1-213ENST00000620219 FABP4P15090 132 aa12.33□□□□□ -0.44
CPSF1-213ENST00000620219 TUBA4BQ9H853 241 aa12.33□□□□□ -0.44
CPSF1-213ENST00000620219 CSMD1Q96PZ7 3565 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 ZANQ9Y493 2812 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 CHEK1O14757 476 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 HTN1P15515 57 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 IGKV1D-37A0A075B6S9 117 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 MUC21A0A0G2JKD1 596 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 MUC21A0A140T8X8 626 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 MUC21Q5SSG8 566 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 TEX29Q8N6K0 151 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 ZNF418Q8TF45 676 aaPredicted RBP12.32□□□□□ -0.44
CPSF1-213ENST00000620219 IMMP2LQ96T52 175 aa12.32□□□□□ -0.44
CPSF1-213ENST00000620219 A0A1W2PS18 150 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 CXorf65A6NEN9 183 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 PAX2Q02962 417 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 KIAA1644Q3SXP7 199 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 SAMD10Q9BYL1 202 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 CBLN1P23435 193 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 LOXL1Q08397 574 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-213ENST00000620219 GLMPQ8WWB7 406 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 SHANK2-AS3Q9BTD1 123 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 IGKV2-40A0A087WW87 121 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-213ENST00000620219 XKRY2A2RUG3 117 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 SNURFLB1AK76 121 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 IGKV2D-40P01614 121 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-213ENST00000620219 TEX38Q6PEX7 206 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 OR10D4PQ8NGN7 298 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 DYNLRB2Q8TF09 96 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 WFDC12Q8WWY7 111 aa12.31□□□□□ -0.44
CPSF1-213ENST00000620219 TRBV7-1A0A0A6YYK4 115 aa12.3□□□□□ -0.44
CPSF1-213ENST00000620219 CIARTQ8N365 385 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms