RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TTC32Q5I0X7 151 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 Q6ZS92 163 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 WFDC12Q8WWY7 111 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 MEGF9Q9H1U4 602 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 TOMM7Q9P0U1 55 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 F2Z2F3 143 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 EMP1P54849 157 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 C5orf64Q2M2E5 130 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 LYPD2Q6UXB3 125 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 CYSLTR1Q9Y271 337 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 TPTE2P1Q5T6R2 138 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 VMO1Q7Z5L0 202 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 ZNF664Q8N3J9 261 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 OR4X2Q8NGF9 303 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 VCX2Q9H322 139 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 FREM1Q5H8C1 2179 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 ZNF138P52744 262 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 LYZL1Q6UWQ5 148 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 NPFFR1Q9GZQ6 430 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 ANAPC1Q9H1A4 1944 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 PF4P02776 101 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 LDLRAD2Q5SZI1 272 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 PFN1P07737 140 aaKnown RBP11.41□□□□□ -0.58
CPSF1-212ENST00000616140 OR2K2Q8NGT1 345 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 WIPF3A6NGB9 483 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 ORAOV1Q8WV07 137 aa11.41□□□□□ -0.58
CPSF1-212ENST00000616140 IGKV1-39P01597 117 aa11.4□□□□□ -0.58
CPSF1-212ENST00000616140 IGKV1D-39P04432 117 aa11.4□□□□□ -0.58
CPSF1-212ENST00000616140 FXYD7P58549 80 aa11.4□□□□□ -0.58
CPSF1-212ENST00000616140 SAMD13Q5VXD3 122 aa11.4□□□□□ -0.58
CPSF1-212ENST00000616140 C2orf88Q9BSF0 95 aa11.4□□□□□ -0.58
CPSF1-212ENST00000616140 LMO1P25800 156 aa11.4□□□□□ -0.58
CPSF1-212ENST00000616140 ORMDL2Q53FV1 153 aa11.4□□□□□ -0.58
CPSF1-212ENST00000616140 TRAV41A0A0B4J266 112 aa11.4□□□□□ -0.59
CPSF1-212ENST00000616140 IFI27P40305 119 aaPredicted RBP11.4□□□□□ -0.59
CPSF1-212ENST00000616140 ZNF124Q15973 351 aa11.4□□□□□ -0.59
CPSF1-212ENST00000616140 RASL11AQ6T310 242 aa11.4□□□□□ -0.59
CPSF1-212ENST00000616140 RNF5Q99942 180 aa11.4□□□□□ -0.59
CPSF1-212ENST00000616140 MYO9AB2RTY4 2548 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 A0A1B0GUS0 222 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 A0A1W2PRX2 142 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 BUB1B-PAK6H3BSN5 160 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 BEND2Q8NDZ0 799 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 NAA38Q9BRA0 125 aaKnown RBP11.39□□□□□ -0.59
CPSF1-212ENST00000616140 LY6G6EA0A0G2JKS1 128 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 hDV102S1A0JD36 115 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 ZNF503-AS2A6NEH8 195 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 IGFL4Q6B9Z1 124 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 U3KQA8 63 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 PLXNA4Q9HCM2 1894 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 TRGV2A0A075B6R0 118 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 IGKV3D-20A0A0C4DH25 116 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 A0A1W2PPI3 338 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 NDUFS6O75380 124 aaKnown RBP11.39□□□□□ -0.59
CPSF1-212ENST00000616140 SIGLEC15Q6ZMC9 328 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 Q6ZR03 302 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 NUP37Q8NFH4 326 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 TMEM101Q96IK0 257 aa11.39□□□□□ -0.59
CPSF1-212ENST00000616140 IGKCP01834 107 aa11.38□□□□□ -0.59
CPSF1-212ENST00000616140 PRR14LQ5THK1 2151 aa11.38□□□□□ -0.59
CPSF1-212ENST00000616140 CD300EQ496F6 205 aaPredicted RBP11.38□□□□□ -0.59
CPSF1-212ENST00000616140 RPRMLQ8N4K4 120 aa11.38□□□□□ -0.59
CPSF1-212ENST00000616140 PRSS22Q9GZN4 317 aa11.38□□□□□ -0.59
CPSF1-212ENST00000616140 WDR86Q86TI4 376 aa11.38□□□□□ -0.59
CPSF1-212ENST00000616140 MCRIP2Q9BUT9 160 aaKnown RBP11.38□□□□□ -0.59
CPSF1-212ENST00000616140 H3BRM9 83 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 NDPQ00604 133 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 MS4A6AQ9H2W1 248 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 ZNF815PA8K554 130 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 EFNA4P52798 201 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 SEC11AP67812 179 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 MPV17L2Q567V2 206 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 COL8A2P25067 703 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 BRD3OSQ6XYD6 125 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 FAM169BQ8N8A8 192 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 C11orf44Q8N8P7 122 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 OOSP1A8MZH6 123 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 FNDC10F2Z333 226 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 OVOL1O14753 267 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 ZNF726P1Q15940 193 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 DEFB104AQ8WTQ1 72 aa11.37□□□□□ -0.59
CPSF1-212ENST00000616140 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.36□□□□□ -0.59
CPSF1-212ENST00000616140 HSD52Q0P140 79 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 CYYR1Q96J86 154 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 MRPL27Q9P0M9 148 aaKnown RBP11.36□□□□□ -0.59
CPSF1-212ENST00000616140 CCDC168Q8NDH2 2452 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 ITGB1BP1O14713 200 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 DUSP14O95147 198 aaKnown RBP11.36□□□□□ -0.59
CPSF1-212ENST00000616140 GUSBP1Q15486 140 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 MINOS1Q5TGZ0 78 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 GTSCR1Q86UQ5 136 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 TMEM14BQ9NUH8 114 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 MRPS16Q9Y3D3 137 aaKnown RBP11.36□□□□□ -0.59
CPSF1-212ENST00000616140 MINOS1-NBL1R4GNA1 71 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 SRRM4A7MD48 611 aaKnown RBP11.36□□□□□ -0.59
CPSF1-212ENST00000616140 DLEU1O43261 78 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 ZNF688P0C7X2 276 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 ERVK11-1P61568 191 aa11.36□□□□□ -0.59
CPSF1-212ENST00000616140 CHTOPQ9Y3Y2 248 aaKnown RBP11.36□□□□□ -0.59
CPSF1-212ENST00000616140 CHD8Q9HCK8 2581 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms