RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 GP9P14770 177 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 GCHFRP30047 84 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 UBE2L3P68036 154 aaKnown RBP11.18□□□□□ -0.62
VRK3-212ENST00000596814 CCL20P78556 96 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 BPIFA4PQ86YQ2 179 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 TMPRSS5Q9H3S3 457 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 IGHV3OR16-13A0A075B7E8 117 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 IGHV3-74A0A0B4J1X5 117 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 IGHV3-66A0A0C4DH42 116 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 IGHV7-4-1A0A0J9YVY3 117 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 A0A1W2PS18 150 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 OR10J4P0C629 311 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 RPL7P18124 248 aaKnown RBP11.17□□□□□ -0.62
VRK3-212ENST00000596814 PSMB3P49720 205 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 OR8I2Q8N0Y5 310 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 DLX4Q92988 240 aaPredicted RBP11.17□□□□□ -0.62
VRK3-212ENST00000596814 FAM210AQ96ND0 272 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 TMEM167BQ9NRX6 74 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 TMEM14CQ9P0S9 112 aa11.17□□□□□ -0.62
VRK3-212ENST00000596814 LINC00862A6NCI5 91 aa11.16□□□□□ -0.62
VRK3-212ENST00000596814 MYCNOSP40205 109 aa11.16□□□□□ -0.62
VRK3-212ENST00000596814 C1orf194Q5T5A4 169 aa11.16□□□□□ -0.62
VRK3-212ENST00000596814 GRAMD2BQ96HH9 432 aa11.16□□□□□ -0.62
VRK3-212ENST00000596814 TMEM231Q9H6L2 316 aa11.16□□□□□ -0.62
VRK3-212ENST00000596814 GNG13Q9P2W3 67 aa11.16□□□□□ -0.62
VRK3-212ENST00000596814 PEMTQ9UBM1 199 aa11.16□□□□□ -0.62
VRK3-212ENST00000596814 EDN2P20800 178 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 BMI1P35226 326 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 PPT1P50897 306 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 C16orf54Q6UWD8 224 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 OR4F17Q8NGA8 305 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 OR9G4Q8NGQ1 327 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 FXYD5Q96DB9 178 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 GPR82Q96P67 336 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 OR4F4Q96R69 305 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 RHPN1-AS1Q9BWJ2 59 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 MED9Q9NWA0 146 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 SMPXQ9UHP9 88 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 TENM1Q9UKZ4 2725 aa11.15□□□□□ -0.62
VRK3-212ENST00000596814 C2orf70A6NJV1 201 aa11.15□□□□□ -0.63
VRK3-212ENST00000596814 MRPS12O15235 138 aaKnown RBP11.15□□□□□ -0.63
VRK3-212ENST00000596814 IFNA1P01562 189 aa11.15□□□□□ -0.63
VRK3-212ENST00000596814 COMMD7Q86VX2 200 aa11.15□□□□□ -0.63
VRK3-212ENST00000596814 MARC2Q969Z3 335 aa11.15□□□□□ -0.63
VRK3-212ENST00000596814 MANBALQ9NQG1 85 aa11.15□□□□□ -0.63
VRK3-212ENST00000596814 WNK1Q9H4A3 2382 aa11.15□□□□□ -0.63
VRK3-212ENST00000596814 CHEK1O14757 476 aa11.14□□□□□ -0.63
VRK3-212ENST00000596814 PF4P02776 101 aa11.14□□□□□ -0.63
VRK3-212ENST00000596814 GALR1P47211 349 aa11.14□□□□□ -0.63
VRK3-212ENST00000596814 SUN5Q8TC36 379 aa11.14□□□□□ -0.63
VRK3-212ENST00000596814 GLMPQ8WWB7 406 aa11.14□□□□□ -0.63
VRK3-212ENST00000596814 ZNF747Q9BV97 191 aa11.14□□□□□ -0.63
VRK3-212ENST00000596814 ELOVL1Q9BW60 279 aa11.14□□□□□ -0.63
VRK3-212ENST00000596814 M0QZ24 198 aa11.13□□□□□ -0.63
VRK3-212ENST00000596814 OVOL1O14753 267 aa11.13□□□□□ -0.63
VRK3-212ENST00000596814 SNRPCP09234 159 aaKnown RBP11.13□□□□□ -0.63
VRK3-212ENST00000596814 IGLC2P0DOY2 106 aa11.13□□□□□ -0.63
VRK3-212ENST00000596814 HIST1H1EP10412 219 aaKnown RBP11.13□□□□□ -0.63
VRK3-212ENST00000596814 ATF4P18848 351 aaPredicted RBP11.13□□□□□ -0.63
VRK3-212ENST00000596814 PMS2P11Q13670 270 aa11.13□□□□□ -0.63
VRK3-212ENST00000596814 NDUFA5Q16718 116 aa11.13□□□□□ -0.63
VRK3-212ENST00000596814 HAGHQ16775 308 aa11.13□□□□□ -0.63
VRK3-212ENST00000596814 TOR2AQ5JU69 321 aa11.13□□□□□ -0.63
VRK3-212ENST00000596814 C12orf54Q6X4T0 127 aa11.13□□□□□ -0.63
VRK3-212ENST00000596814 SIGLEC15Q6ZMC9 328 aa11.13□□□□□ -0.63
VRK3-212ENST00000596814 FBN1P35555 2871 aaKnown RBP11.13□□□□□ -0.63
VRK3-212ENST00000596814 RAB19A4D1S5 217 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 H3BQ15 152 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 NBEAP1P0C6P0 100 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 BCL2P10415 239 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 FOLR2P14207 255 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 CBLN1P23435 193 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 UBE2G2P60604 165 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 GUK1Q16774 197 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 LURAP1LQ8IV03 231 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 C3orf56Q8N813 242 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 BLNKQ8WV28 456 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 ZNF586Q9NXT0 402 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 RBFOX3A6NFN3 312 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 PAGE4O60829 102 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 TAGLN2P37802 199 aaKnown RBP11.12□□□□□ -0.63
VRK3-212ENST00000596814 EIF5A2Q9GZV4 153 aaKnown RBP11.12□□□□□ -0.63
VRK3-212ENST00000596814 SMAD5-AS1Q9Y6J3 95 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 ARL2-SNX15V9GYD0 113 aa11.12□□□□□ -0.63
VRK3-212ENST00000596814 A0A087X0K7 114 aa11.11□□□□□ -0.63
VRK3-212ENST00000596814 LOC102723971A0A1B0GUV8 181 aa11.11□□□□□ -0.63
VRK3-212ENST00000596814 HELTA6NFD8 242 aa11.11□□□□□ -0.63
VRK3-212ENST00000596814 ZNF785A8K8V0 405 aa11.11□□□□□ -0.63
VRK3-212ENST00000596814 H3BTX0 84 aa11.11□□□□□ -0.63
VRK3-212ENST00000596814 CSN3P07498 182 aa11.11□□□□□ -0.63
VRK3-212ENST00000596814 YTHDF2Q9Y5A9 579 aaKnown RBP11.11□□□□□ -0.63
VRK3-212ENST00000596814 TRBV19A0A075B6N1 114 aa11.1□□□□□ -0.63
VRK3-212ENST00000596814 FAM74A7A6NL05 159 aa11.1□□□□□ -0.63
VRK3-212ENST00000596814 PDE6HQ13956 83 aa11.1□□□□□ -0.63
VRK3-212ENST00000596814 ZNF506Q5JVG8 444 aa11.1□□□□□ -0.63
VRK3-212ENST00000596814 CST9LP1Q5W188 147 aa11.1□□□□□ -0.63
VRK3-212ENST00000596814 ADAMTSL5Q6ZMM2 481 aa11.1□□□□□ -0.63
VRK3-212ENST00000596814 TCF24Q7RTU0 167 aa11.1□□□□□ -0.63
VRK3-212ENST00000596814 RARRES2Q99969 163 aa11.1□□□□□ -0.63
VRK3-212ENST00000596814 VAX2Q9UIW0 290 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms