RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 PPP1R27Q86WC6 154 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 FAM216BQ8N7L0 139 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 MBD3L2Q8NHZ7 208 aaPredicted RBP2.87□□□□□ -1.95
VMP1-216ENST00000592790 DDB2Q92466 427 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 GAFA1Q96PS6 74 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 HIST1H4GQ99525 98 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 CSTL1Q9H114 145 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 F11RQ9Y624 299 aaKnown RBP2.87□□□□□ -1.95
VMP1-216ENST00000592790 EXPH5Q8NEV8 1989 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 MYO7BQ6PIF6 2116 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 SHANK1Q9Y566 2161 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 OOSP1A8MZH6 123 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 H3BUT2 72 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 ZNHIT1O43257 154 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 CA1P00915 261 aaPredicted RBP2.87□□□□□ -1.95
VMP1-216ENST00000592790 LTAP01374 205 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 IGHV1-46P01743 117 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 IL4P05112 153 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 SCGB1C2P0DMR2 95 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 GNG5P63218 68 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 RHOGP84095 191 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 PAX2Q02962 417 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 ADIPOQQ15848 244 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 TAL2Q16559 108 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 RNFT1Q5M7Z0 435 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 BVES-AS1Q5T3Y7 98 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 SPANXN1Q5VSR9 72 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 TEX36Q5VZQ5 186 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 RNF125Q96EQ8 232 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 SIGMAR1Q99720 223 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 KLF12Q9Y4X4 402 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 NCOA6Q14686 2063 aaPredicted RBP2.87□□□□□ -1.95
VMP1-216ENST00000592790 NBASA2RRP1 2371 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 TRBV20OR9-2A0A075B6H5 130 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 TRAV5A0A0B4J249 113 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 IGHV1-24A0A0C4DH33 117 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 MUC21A0A0G2JKD1 596 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 MUC21A0A140T8X8 626 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 ZNF503-AS2A6NEH8 195 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 WIPF1O43516 503 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 IGKCP01834 107 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 FTH1P19P0C7X4 201 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 COX7A1P24310 79 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 SRSF9Q13242 221 aaKnown RBP eCLIP2.87□□□□□ -1.95
VMP1-216ENST00000592790 C17orf58Q2M2W7 97 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 ORMDL2Q53FV1 153 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 MUC21Q5SSG8 566 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 SAMD5Q5TGI4 173 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 LCN12Q6JVE5 192 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 ST6GALNAC6Q969X2 333 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 METTL26Q96S19 204 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 MEGF9Q9H1U4 602 aa2.87□□□□□ -1.95
VMP1-216ENST00000592790 TNRC6AQ8NDV7 1962 aaKnown RBP2.86□□□□□ -1.95
VMP1-216ENST00000592790 ABCA7Q8IZY2 2146 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 PRSS46E5RG02 174 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 CDX4O14627 284 aaPredicted RBP2.86□□□□□ -1.95
VMP1-216ENST00000592790 NUPR1O60356 82 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 FAM106CPP0CH98 169 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 PLNP26678 52 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 DLX6P56179 175 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 C11orf53Q8IXP5 236 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 FXYD5Q96DB9 178 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 ZNF48Q96MX3 618 aaPredicted RBP2.86□□□□□ -1.95
VMP1-216ENST00000592790 KRTAP3-3Q9BYR6 98 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 KRTAP3-2Q9BYR7 98 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 CRIM1Q9NZV1 1036 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 UFC1Q9Y3C8 167 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 CUBNO60494 3623 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 IGLV3-9A0A075B6K5 115 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 PPIAL4CA0A0B4J2A2 164 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 TMEM262E9PQX1 116 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.86□□□□□ -1.95
VMP1-216ENST00000592790 K7EP34 96 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 PPIAL4GP0DN37 164 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 CTRLP40313 264 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 RPL13AP40429 203 aaKnown RBP2.86□□□□□ -1.95
VMP1-216ENST00000592790 SRSF1Q07955 248 aaKnown RBP eCLIP2.86□□□□□ -1.95
VMP1-216ENST00000592790 ZNF474Q6S9Z5 364 aaPredicted RBP2.86□□□□□ -1.95
VMP1-216ENST00000592790 SPATA12Q7Z6I5 190 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 DTX1Q86Y01 620 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 OR10W1Q8NGF6 305 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 FAM57AQ8TBR7 257 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 RAB37Q96AX2 223 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 SGK494Q96LW2 274 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 RCHY1Q96PM5 261 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 SHANK2-AS3Q9BTD1 123 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 DPM3Q9P2X0 92 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 TRANK1O15050 2925 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 hDV102S1A0JD36 115 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 K7EM74 188 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 NBR2O15453 112 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 GUSBP1Q15486 140 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 LINC01545Q5VT33 79 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 Q6ZR03 302 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 FDCSPQ8NFU4 85 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 COPS9Q8WXC6 57 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 PRDM6Q9NQX0 595 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 C21orf62Q9NYP8 219 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 CSMD1Q96PZ7 3565 aa2.86□□□□□ -1.95
VMP1-216ENST00000592790 TNRC6BQ9UPQ9 1833 aaKnown RBP2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms