RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 Q8WTZ3 238 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 GAR1Q9NY12 217 aaKnown RBP8.02□□□□□ -1.13
VPS4B-204ENST00000589604 TECRQ9NZ01 308 aaKnown RBP8.02□□□□□ -1.13
VPS4B-204ENST00000589604 PUS1Q9Y606 427 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS4B-204ENST00000589604 IGHV3-35A0A0C4DH35 117 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 A0A0G2JLM5 398 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 IGHV3-11P01762 117 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 ELANEP08246 267 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 BCL2P10415 239 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 ADCYAP1P18509 176 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 PSMB3P49720 205 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 C10orf91Q5T1B1 145 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 TEX38Q6PEX7 206 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 OR4X2Q8NGF9 303 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 SLC25A39Q9BZJ4 359 aaPredicted RBP8.02□□□□□ -1.13
VPS4B-204ENST00000589604 HIGD1AQ9Y241 93 aa8.02□□□□□ -1.13
VPS4B-204ENST00000589604 A0A1W2PRX2 142 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 H3BRN7 92 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 BMPR1BO00238 502 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 SRP19P09132 144 aaKnown RBP8.01□□□□□ -1.13
VPS4B-204ENST00000589604 PEA15Q15121 130 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 KHDC3LQ587J8 217 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 LEMD1Q68G75 181 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 SHISA2Q6UWI4 295 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 PQLC2Q6ZP29 291 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 RXFP4Q8TDU9 374 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 SHANK2-AS3Q9BTD1 123 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 PBDC1Q9BVG4 233 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 EIF5A2Q9GZV4 153 aaKnown RBP8.01□□□□□ -1.13
VPS4B-204ENST00000589604 SMDT1Q9H4I9 107 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 GNB4Q9HAV0 340 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 TREM1Q9NP99 234 aa8.01□□□□□ -1.13
VPS4B-204ENST00000589604 MRPS12O15235 138 aaKnown RBP8□□□□□ -1.13
VPS4B-204ENST00000589604 PAGE4O60829 102 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 HSPB1P04792 205 aaKnown RBP8□□□□□ -1.13
VPS4B-204ENST00000589604 PYYP10082 97 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 GP9P14770 177 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 ZP3P21754 424 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 ARL3P36405 182 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 TAS2R45P59539 299 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 CD81P60033 236 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 SLC35B1P78383 322 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 NSUN5P1Q3KNT7 163 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 ARL6IP6Q8N6S5 226 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 FXYD5Q96DB9 178 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 MANBALQ9NQG1 85 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 VAX2Q9UIW0 290 aa8□□□□□ -1.13
VPS4B-204ENST00000589604 YTHDF2Q9Y5A9 579 aaKnown RBP8□□□□□ -1.13
VPS4B-204ENST00000589604 NBEAL1Q6ZS30 2694 aa7.99□□□□□ -1.13
VPS4B-204ENST00000589604 IGHV3OR16-8A0A075B7F1 116 aa7.99□□□□□ -1.13
VPS4B-204ENST00000589604 ZNF98A6NK75 572 aa7.99□□□□□ -1.13
VPS4B-204ENST00000589604 FAM74A7A6NL05 159 aa7.99□□□□□ -1.13
VPS4B-204ENST00000589604 PAXXQ9BUH6 204 aa7.99□□□□□ -1.13
VPS4B-204ENST00000589604 OR51M1Q9H341 326 aa7.99□□□□□ -1.13
VPS4B-204ENST00000589604 U3KQE9 123 aa7.99□□□□□ -1.13
VPS4B-204ENST00000589604 WNK1Q9H4A3 2382 aa7.99□□□□□ -1.13
VPS4B-204ENST00000589604 KRBOX1C9JBD0 128 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 OR7C2O60412 319 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 NDUFS6O75380 124 aaKnown RBP7.98□□□□□ -1.13
VPS4B-204ENST00000589604 SCGB2A1O75556 95 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 IFNA1P01562 189 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 OR10J4P0C629 311 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 SFTA3P0C7M3 94 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 NPPCP23582 126 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 ATP5G3P48201 142 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 PPT1P50897 306 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 UBE2G2P60604 165 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 RPL11P62913 178 aaKnown RBP7.98□□□□□ -1.13
VPS4B-204ENST00000589604 IQCF2Q8IXL9 164 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 UBE2E2Q96LR5 201 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 OR5B12Q96R08 314 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 SLC35B3Q9H1N7 401 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 TMEM14CQ9P0S9 112 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 PEF1Q9UBV8 284 aaKnown RBP7.98□□□□□ -1.13
VPS4B-204ENST00000589604 TNFRSF6BO95407 300 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 TAGLN2P37802 199 aaKnown RBP7.98□□□□□ -1.13
VPS4B-204ENST00000589604 MEF2BQ02080 365 aaPredicted RBP7.98□□□□□ -1.13
VPS4B-204ENST00000589604 RELQ04864 619 aaPredicted RBP7.98□□□□□ -1.13
VPS4B-204ENST00000589604 DEFB136Q30KP8 78 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 KHDC1LQ5JSQ8 128 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 FAM90A2PQ658T7 463 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 UNQ9165/PRO28630Q6UXU0 137 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 C8orf86Q6ZUL3 223 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 NDUFA11Q86Y39 141 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 CCDC28AQ8IWP9 274 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 NARS2Q96I59 477 aaKnown RBP7.98□□□□□ -1.13
VPS4B-204ENST00000589604 C17orf77Q96MU5 243 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 DUX3Q96PT4 197 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 TMEM167BQ9NRX6 74 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 CARHSP1Q9Y2V2 147 aaKnown RBP7.98□□□□□ -1.13
VPS4B-204ENST00000589604 TSSC4Q9Y5U2 329 aaPredicted RBP7.98□□□□□ -1.13
VPS4B-204ENST00000589604 ARL2-SNX15V9GYD0 113 aa7.98□□□□□ -1.13
VPS4B-204ENST00000589604 H3BQ15 152 aa7.97□□□□□ -1.13
VPS4B-204ENST00000589604 NDUFA4O00483 81 aa7.97□□□□□ -1.13
VPS4B-204ENST00000589604 GGCTO75223 188 aaKnown RBP7.97□□□□□ -1.13
VPS4B-204ENST00000589604 APOHP02749 345 aaPredicted RBP7.97□□□□□ -1.13
VPS4B-204ENST00000589604 LGALS1P09382 135 aaKnown RBP7.97□□□□□ -1.13
VPS4B-204ENST00000589604 CRYBB3P26998 211 aa7.97□□□□□ -1.13
VPS4B-204ENST00000589604 MYCNOSP40205 109 aa7.97□□□□□ -1.13
VPS4B-204ENST00000589604 UBE2L3P68036 154 aaKnown RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms