RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PRELID3BQ9Y3B1 194 aa0□□□□□ -2.41
SS18-214ENST00000580003 OBSL1O75147 1896 aa-0.01□□□□□ -2.41
SS18-214ENST00000580003 OR7C1O76099 320 aaPredicted RBP-0.01□□□□□ -2.41
SS18-214ENST00000580003 ERP29P30040 261 aaKnown RBP-0.01□□□□□ -2.41
SS18-214ENST00000580003 PIGPP57054 158 aa-0.01□□□□□ -2.41
SS18-214ENST00000580003 MYL6P60660 151 aa-0.01□□□□□ -2.41
SS18-214ENST00000580003 NABP2Q9BQ15 211 aa-0.01□□□□□ -2.41
SS18-214ENST00000580003 FAM103A1Q9BTL3 118 aaKnown RBP-0.01□□□□□ -2.41
SS18-214ENST00000580003 UNC13CQ8NB66 2214 aa-0.01□□□□□ -2.41
SS18-214ENST00000580003 SCN8AQ9UQD0 1980 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 NUPR2A6NF83 97 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 C5orf67F2Z3F1 127 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 PPYP01298 95 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 CCL4P13236 92 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 VBP1P61758 197 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 EIF5AL1Q6IS14 154 aaKnown RBP-0.02□□□□□ -2.41
SS18-214ENST00000580003 BTF3L4Q96K17 158 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 TEX37Q96LM6 180 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 CCDC94Q9BW85 323 aaPredicted RBP-0.02□□□□□ -2.41
SS18-214ENST00000580003 PLXNA4Q9HCM2 1894 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 SIP14410 1827 aa-0.02□□□□□ -2.41
SS18-214ENST00000580003 MYH7BA7E2Y1 1941 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 TRBV19A0A075B6N1 114 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 FAM159BA6NKW6 160 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 M0R233 179 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 LYPLA2O95372 231 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 RPS17P08708 135 aaKnown RBP-0.03□□□□□ -2.41
SS18-214ENST00000580003 UBE2BP63146 152 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 QRFPP83859 136 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 GLIPR1L1Q6UWM5 242 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 Q8TAT8 98 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 ZC2HC1AQ96GY0 325 aa-0.03□□□□□ -2.41
SS18-214ENST00000580003 PARD6GQ9BYG4 376 aaPredicted RBP-0.03□□□□□ -2.41
SS18-214ENST00000580003 TRAV23DV6A0A075B6W5 121 aa-0.04□□□□□ -2.42
SS18-214ENST00000580003 TRAV4A0A0B4J268 109 aa-0.04□□□□□ -2.42
SS18-214ENST00000580003 SPA17Q15506 151 aa-0.04□□□□□ -2.42
SS18-214ENST00000580003 KIFC1Q9BW19 673 aa-0.04□□□□□ -2.42
SS18-214ENST00000580003 SPRR2GQ9BYE4 73 aa-0.04□□□□□ -2.42
SS18-214ENST00000580003 TRAV27A0A087WT01 109 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 ZNF727A8MUV8 499 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 HAND1O96004 215 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 IFNA7P01567 189 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 HLA-EP13747 358 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 RAB5CP51148 216 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 AESQ08117 197 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 Q6ZQY7 126 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 OTUD6BQ8N6M0 293 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 RAB37Q96AX2 223 aa-0.05□□□□□ -2.42
SS18-214ENST00000580003 NMNAT1Q9HAN9 279 aaPredicted RBP-0.05□□□□□ -2.42
SS18-214ENST00000580003 ANKRD17O75179 2603 aaKnown RBP-0.06□□□□□ -2.42
SS18-214ENST00000580003 TET1Q8NFU7 2136 aa-0.06□□□□□ -2.42
SS18-214ENST00000580003 OR5D16Q8NGK9 328 aa-0.06□□□□□ -2.42
SS18-214ENST00000580003 OPTCQ9UBM4 332 aa-0.06□□□□□ -2.42
SS18-214ENST00000580003 RFX7Q2KHR2 1363 aa-0.06□□□□□ -2.42
SS18-214ENST00000580003 TAX1BP3O14907 124 aa-0.07□□□□□ -2.42
SS18-214ENST00000580003 ARPINQ7Z6K5 226 aa-0.07□□□□□ -2.42
SS18-214ENST00000580003 GGACTQ9BVM4 153 aa-0.07□□□□□ -2.42
SS18-214ENST00000580003 NPCDR1Q9BY65 106 aa-0.07□□□□□ -2.42
SS18-214ENST00000580003 BOKQ9UMX3 212 aaPredicted RBP-0.07□□□□□ -2.42
SS18-214ENST00000580003 B4DSR2 109 aa-0.08□□□□□ -2.42
SS18-214ENST00000580003 C1orf134Q5TEV5 83 aa-0.08□□□□□ -2.42
SS18-214ENST00000580003 ARL5BQ96KC2 179 aa-0.08□□□□□ -2.42
SS18-214ENST00000580003 ARL5AQ9Y689 179 aa-0.08□□□□□ -2.42
SS18-214ENST00000580003 ADCY9O60503 1353 aa-0.08□□□□□ -2.42
SS18-214ENST00000580003 BCL9O00512 1426 aa-0.09□□□□□ -2.42
SS18-214ENST00000580003 GPR31O00270 319 aa-0.09□□□□□ -2.42
SS18-214ENST00000580003 NIPSNAP2O75323 286 aa-0.09□□□□□ -2.42
SS18-214ENST00000580003 RGS21Q2M5E4 152 aa-0.09□□□□□ -2.42
SS18-214ENST00000580003 LINC00299Q6ZSB3 139 aa-0.09□□□□□ -2.42
SS18-214ENST00000580003 S100A7AQ86SG5 101 aa-0.09□□□□□ -2.42
SS18-214ENST00000580003 POP5Q969H6 163 aaKnown RBP-0.09□□□□□ -2.42
SS18-214ENST00000580003 CST8O60676 142 aa-0.1□□□□□ -2.43
SS18-214ENST00000580003 TCRBP04435 133 aa-0.1□□□□□ -2.43
SS18-214ENST00000580003 FXYD4P59646 89 aa-0.1□□□□□ -2.43
SS18-214ENST00000580003 HYLS1Q96M11 299 aa-0.1□□□□□ -2.43
SS18-214ENST00000580003 SIGMAR1Q99720 223 aa-0.1□□□□□ -2.43
SS18-214ENST00000580003 A0A096LPI6 279 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 CD14P08571 375 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 ATP5G3P48201 142 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 SERPINB9P50453 376 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 DYNLT3P51808 116 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 LSM6P62312 80 aaKnown RBP-0.11□□□□□ -2.43
SS18-214ENST00000580003 EIF3IQ13347 325 aaKnown RBP-0.11□□□□□ -2.43
SS18-214ENST00000580003 LIN52Q52LA3 116 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 PRR15Q8IV56 129 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 PXT1Q8NFP0 134 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 PLAC4Q8WY50 150 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 BDP1A6H8Y1 2624 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 KIF1BO60333 1816 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 MEGF8Q7Z7M0 2845 aa-0.11□□□□□ -2.43
SS18-214ENST00000580003 TMEM256-PLSCR3K7ERE1 68 aa-0.12□□□□□ -2.43
SS18-214ENST00000580003 OCIAD2Q56VL3 154 aa-0.12□□□□□ -2.43
SS18-214ENST00000580003 LRRC18Q8N456 261 aa-0.12□□□□□ -2.43
SS18-214ENST00000580003 CHCHD1Q96BP2 118 aaKnown RBP-0.12□□□□□ -2.43
SS18-214ENST00000580003 SLC22A13Q9Y226 551 aa-0.12□□□□□ -2.43
SS18-214ENST00000580003 ZDBF2Q9HCK1 2354 aa-0.12□□□□□ -2.43
SS18-214ENST00000580003 ERBINQ96RT1 1412 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 FANCMQ8IYD8 2048 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 PLB1Q6P1J6 1458 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 IFNA4P05014 189 aa-0.13□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 197.2 ms