RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 A0A1W2PRM7 423 aa7.96□□□□□ -1.14
VPS53-220ENST00000576149 APCSP02743 223 aa7.96□□□□□ -1.14
VPS53-220ENST00000576149 BRS3P32247 399 aa7.96□□□□□ -1.14
VPS53-220ENST00000576149 HES1Q14469 280 aa7.96□□□□□ -1.14
VPS53-220ENST00000576149 KIR3DL3Q8N743 410 aa7.96□□□□□ -1.14
VPS53-220ENST00000576149 A0A1W2PPR1 153 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 SRIP30626 198 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 CCDC144NLQ6NUI1 221 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 ZNF562Q6V9R5 426 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 LINC00322Q6ZN03 302 aaPredicted RBP7.95□□□□□ -1.14
VPS53-220ENST00000576149 VMO1Q7Z5L0 202 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 HSPB9Q9BQS6 159 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 SHANK2-AS3Q9BTD1 123 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 SAMD10Q9BYL1 202 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 PRSS22Q9GZN4 317 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 POLR3KQ9Y2Y1 108 aaPredicted RBP7.95□□□□□ -1.14
VPS53-220ENST00000576149 NPIPB5A8MRT5 1133 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 HIGD1CA8MV81 97 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 OOSP1A8MZH6 123 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 ZNF253O75346 499 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 CD33P20138 364 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 ZFP36P26651 326 aaKnown RBP7.95□□□□□ -1.14
VPS53-220ENST00000576149 RBX1P62877 108 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 KLF17Q5JT82 389 aaPredicted RBP7.95□□□□□ -1.14
VPS53-220ENST00000576149 GDF5OSQ5U4N7 250 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 DYNAPQ8N1N2 210 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 ZNF491Q8N8L2 437 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 ZNF492Q9P255 531 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 ARHGAP32A7KAX9 2087 aa7.95□□□□□ -1.14
VPS53-220ENST00000576149 IGLV11-55A0A075B6I3 123 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 C19orf71A6NCJ1 209 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 H3BRN7 92 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 GPX1P07203 203 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 CT83Q5H943 113 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 C1orf194Q5T5A4 169 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 MINOS1Q5TGZ0 78 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 ATP5L2Q7Z4Y8 100 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 Q8N6K4 173 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 TMEM190Q8WZ59 177 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 RCHY1Q96PM5 261 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 FANCD2OSQ96PS1 177 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 NDUFAF3Q9BU61 184 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 RPP21Q9H633 154 aaKnown RBP7.94□□□□□ -1.14
VPS53-220ENST00000576149 MINOS1-NBL1R4GNA1 71 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 ZZEF1O43149 2961 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 VWC2LB2RUY7 222 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 HOXB4P17483 251 aaPredicted RBP7.94□□□□□ -1.14
VPS53-220ENST00000576149 CDKN1AP38936 164 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 EBI3Q14213 229 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 BPIFA4PQ86YQ2 179 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 EXOC3-AS1Q8N2X6 119 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 SIGLECL1Q8N7X8 197 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 ARPC1AQ92747 370 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 KCNS1Q96KK3 526 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 TBX15Q96SF7 602 aa7.94□□□□□ -1.14
VPS53-220ENST00000576149 TRBV19A0A075B6N1 114 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 TRAV30A0A087WSZ9 112 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 A0A1B0GXF2 115 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 WI2-2373I1.2A0A1W2PRP0 233 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 A0A1W2PS18 150 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 A6NNC1 897 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 ZNF705FA8MVS1 300 aaPredicted RBP7.93□□□□□ -1.14
VPS53-220ENST00000576149 NDUFS7O75251 213 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 SCGB2A1O75556 95 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 IGLV2-11P01706 119 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 ZNF705DP0CH99 300 aaPredicted RBP7.93□□□□□ -1.14
VPS53-220ENST00000576149 ZNF705BP0CI00 300 aaPredicted RBP7.93□□□□□ -1.14
VPS53-220ENST00000576149 IGLC2P0DOY2 106 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 LY6DQ14210 128 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 Q86TA4 180 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 TTC9CQ8N5M4 171 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 PGPEP1Q9NXJ5 209 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 KIR2DL5BA0A0G2JN68 375 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 KIR2DL5BA0A0G2JPC4 375 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 TRBV6-1A0A0K0K1D8 114 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 NCBP2LA6PVI3 153 aaKnown RBP7.93□□□□□ -1.14
VPS53-220ENST00000576149 A8MWL6 223 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 MRPS12O15235 138 aaKnown RBP7.93□□□□□ -1.14
VPS53-220ENST00000576149 P01737 135 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 IL4P05112 153 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 NDPQ00604 133 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 TCF24Q7RTU0 167 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 KIR2DL5AQ8N109 375 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 OR4F17Q8NGA8 305 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 C18orf32Q8TCD1 76 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 SIRPDQ9H106 197 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 LRBAP50851 2863 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 DCHS2Q6V1P9 2916 aa7.93□□□□□ -1.14
VPS53-220ENST00000576149 TRAV8-1A0A0A6YYK1 113 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 NPIPB6E9PJ23 425 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 F8WDY8 70 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 GNG7O60262 68 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 OR2J3O76001 311 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 MFAP4P55083 255 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 TOMM20LQ6UXN7 152 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 SIGLEC15Q6ZMC9 328 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 TEX43Q6ZNM6 134 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 GOLT1AQ6ZVE7 132 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 LYPD1Q8N2G4 141 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 GTSF1Q8WW33 167 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms