RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 HTR1DP28221 377 aa12.42□□□□□ -0.42
NUP88-207ENST00000573584 SRSF12Q8WXF0 261 aaKnown RBP12.42□□□□□ -0.42
NUP88-207ENST00000573584 HSBP1L1C9JCN9 74 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 CSN3P07498 182 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 MPV17L2Q567V2 206 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 H0Y8G0 127 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 BUB1B-PAK6H3BSN5 160 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 I3L2K1 104 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 RBPJQ06330 500 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 MCRIP2Q9BUT9 160 aaKnown RBP12.41□□□□□ -0.42
NUP88-207ENST00000573584 TMUB1Q9BVT8 246 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 RALYQ9UKM9 306 aaKnown RBP12.41□□□□□ -0.42
NUP88-207ENST00000573584 PCNX1Q96RV3 2341 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 ATMQ13315 3056 aa12.41□□□□□ -0.42
NUP88-207ENST00000573584 TIMM8BQ9Y5J9 83 aaPredicted RBP12.41□□□□□ -0.42
NUP88-207ENST00000573584 A0A1B0GUT8 65 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 ZNF785A8K8V0 405 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 E7EQL1 145 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 HOXB4P17483 251 aaPredicted RBP12.4□□□□□ -0.42
NUP88-207ENST00000573584 PLGLAQ15195 96 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 SLC25A34Q6PIV7 304 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 ZC2HC1AQ96GY0 325 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 C17orf77Q96MU5 243 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 NGBQ9NPG2 151 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 CUL9Q8IWT3 2517 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 KLK10O43240 276 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 IGKV1-17P01599 117 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 C16orf54Q6UWD8 224 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 PET117Q6UWS5 81 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 ASCL2Q99929 193 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 HSPB8Q9UJY1 196 aa12.4□□□□□ -0.42
NUP88-207ENST00000573584 OVOL3O00110 214 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 ARMS2P0C7Q2 107 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 PRB4P10163 310 aaPredicted RBP12.39□□□□□ -0.43
NUP88-207ENST00000573584 COX7A1P24310 79 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 RPEQ96AT9 228 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 TTC28Q96AY4 2481 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 TRBV19A0A075B6N1 114 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 SHISA9B4DS77 424 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 NUDT3O95989 172 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 BPIFA4PQ86YQ2 179 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 NEU4Q8WWR8 484 aaPredicted RBP12.39□□□□□ -0.43
NUP88-207ENST00000573584 SCNM1Q9BWG6 230 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 MALRD1Q5VYJ5 2156 aa12.39□□□□□ -0.43
NUP88-207ENST00000573584 TACC2O95359 2948 aa12.38□□□□□ -0.43
NUP88-207ENST00000573584 RIGQ13278 110 aa12.38□□□□□ -0.43
NUP88-207ENST00000573584 FBLN7Q53RD9 439 aa12.38□□□□□ -0.43
NUP88-207ENST00000573584 JKAMPQ9P055 326 aa12.38□□□□□ -0.43
NUP88-207ENST00000573584 TRBV6-1A0A0K0K1D8 114 aa12.38□□□□□ -0.43
NUP88-207ENST00000573584 CNIH1O95406 144 aa12.38□□□□□ -0.43
NUP88-207ENST00000573584 ZGRF1Q86YA3 2104 aa12.38□□□□□ -0.43
NUP88-207ENST00000573584 TMEM75Q8N9X5 138 aa12.38□□□□□ -0.43
NUP88-207ENST00000573584 RNASE8Q8TDE3 154 aaKnown RBP12.38□□□□□ -0.43
NUP88-207ENST00000573584 SHANK2-AS3Q9BTD1 123 aa12.38□□□□□ -0.43
NUP88-207ENST00000573584 BSNQ9UPA5 3926 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 IGHV2-70DA0A0C4DH43 119 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 LYNX1G3V0Z9 82 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 K7EQM0 130 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 LYNX1P0DP58 116 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 VAMP3Q15836 100 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 PMCHL2Q9BQD1 86 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 TPPP3Q9BW30 176 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 SCRT2Q9NQ03 307 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 AP5S1Q9NUS5 200 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 PSG8Q9UQ74 426 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 RNF24Q9Y225 148 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 AKAP13Q12802 2813 aa12.37□□□□□ -0.43
NUP88-207ENST00000573584 HLA-DRB1P01911 266 aa12.36□□□□□ -0.43
NUP88-207ENST00000573584 BVES-AS1Q5T3Y7 98 aa12.36□□□□□ -0.43
NUP88-207ENST00000573584 GFRALQ6UXV0 394 aa12.36□□□□□ -0.43
NUP88-207ENST00000573584 SIGLEC15Q6ZMC9 328 aa12.36□□□□□ -0.43
NUP88-207ENST00000573584 OR4C5Q8NGB2 326 aa12.36□□□□□ -0.43
NUP88-207ENST00000573584 K7EIM0 57 aa12.36□□□□□ -0.43
NUP88-207ENST00000573584 PCP4P48539 62 aa12.36□□□□□ -0.43
NUP88-207ENST00000573584 ERASQ7Z444 233 aa12.36□□□□□ -0.43
NUP88-207ENST00000573584 LOC105371242A0A075B767 164 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 PPIAL4CA0A0B4J2A2 164 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 PPIAL4GP0DN37 164 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 CRIP1P50238 77 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 PSG3Q16557 428 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 C21orf62-AS1Q17RA5 79 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 PRSS3P2Q8NHM4 247 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 ANKRD11Q6UB99 2663 aaPredicted RBP12.35□□□□□ -0.43
NUP88-207ENST00000573584 H3BRN7 92 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 APOBEC3AP31941 199 aaPredicted RBP12.35□□□□□ -0.43
NUP88-207ENST00000573584 C12orf54Q6X4T0 127 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 ZNF491Q8N8L2 437 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 ABHD17AQ96GS6 310 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 MS4A6AQ9H2W1 248 aa12.35□□□□□ -0.43
NUP88-207ENST00000573584 IL4P05112 153 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 LINC01545Q5VT33 79 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 FA2HQ7L5A8 372 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 LYPD1Q8N2G4 141 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 TPRP12270 2363 aaKnown RBP12.34□□□□□ -0.43
NUP88-207ENST00000573584 MUC21A0A0G2JKD1 596 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 MUC21A0A140T8X8 626 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 K7EP13 123 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 M0R3E3 92 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 TAX1BP3O14907 124 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 FCGR2BP31994 310 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms