RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 HOXD3P31249 432 aaPredicted RBP4.92□□□□□ -1.62
VPS53-209ENST00000570771 PSMB3P49720 205 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 NDUFA5Q16718 116 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 NSUN5P1Q3KNT7 163 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 C1orf194Q5T5A4 169 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 C8orf86Q6ZUL3 223 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 REC114Q7Z4M0 266 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 BPIFA4PQ86YQ2 179 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 RPP25LQ8N5L8 163 aaKnown RBP4.92□□□□□ -1.62
VPS53-209ENST00000570771 OR11H1Q8NG94 326 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 OR4F17Q8NGA8 305 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 SFT2D1Q8WV19 159 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 MBD3L1Q8WWY6 194 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 TMEM37Q8WXS4 190 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 TMEM190Q8WZ59 177 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 RAB24Q969Q5 203 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 MARC2Q969Z3 335 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 RAX2Q96IS3 184 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 OR4F4Q96R69 305 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 SHANK2-AS3Q9BTD1 123 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 C20orf24Q9BUV8 137 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 SLC25A39Q9BZJ4 359 aaPredicted RBP4.92□□□□□ -1.62
VPS53-209ENST00000570771 MAP1LC3BQ9GZQ8 125 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 VSIRQ9H7M9 311 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 SLC25A22Q9H936 323 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 DAZ1Q9NQZ3 744 aaKnown RBP4.92□□□□□ -1.62
VPS53-209ENST00000570771 TMEM167BQ9NRX6 74 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 MRPL27Q9P0M9 148 aaKnown RBP4.92□□□□□ -1.62
VPS53-209ENST00000570771 IGHV4OR15-8A0A075B7B6 117 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 A0A087WW49 117 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 A8MWP6 167 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 H3BRN7 92 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 PF4P02776 101 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 NMBP08949 121 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 STAG3L2P0CL84 134 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 STAG3L3P0CL85 134 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 CRYBB3P26998 211 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 MYCNOSP40205 109 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 GALR1P47211 349 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 MEOX2P50222 304 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 KLF5Q13887 457 aaPredicted RBP4.91□□□□□ -1.62
VPS53-209ENST00000570771 USF2Q15853 346 aaPredicted RBP4.91□□□□□ -1.62
VPS53-209ENST00000570771 GCSAMLQ5JQS6 135 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 LCN15Q6UWW0 184 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 PATE2Q6UY27 113 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 C12orf54Q6X4T0 127 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 IL34Q6ZMJ4 242 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 IQCF2Q8IXL9 164 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 OR8I2Q8N0Y5 310 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 OR51M1Q9H341 326 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 HRH4Q9H3N8 390 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 SEPSECSQ9HD40 501 aaKnown RBP4.91□□□□□ -1.62
VPS53-209ENST00000570771 MANBALQ9NQG1 85 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 RFNGQ9Y644 331 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 DNAH9Q9NYC9 4486 aa4.91□□□□□ -1.62
VPS53-209ENST00000570771 NOTCH1P46531 2555 aa4.9□□□□□ -1.62
VPS53-209ENST00000570771 HELTA6NFD8 242 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 ZNF98A6NK75 572 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 ARL14EPLP0DKL9 152 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 HIST1H1EP10412 219 aaKnown RBP4.9□□□□□ -1.63
VPS53-209ENST00000570771 ATF4P18848 351 aaPredicted RBP4.9□□□□□ -1.63
VPS53-209ENST00000570771 FHITP49789 147 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 SYNJ2BPP57105 145 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 UBE2L3P68036 154 aaKnown RBP4.9□□□□□ -1.63
VPS53-209ENST00000570771 FHL3Q13643 280 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 PMS2P11Q13670 270 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 ZNF726P1Q15940 193 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 GUK1Q16774 197 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 SAMD13Q5VXD3 122 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 KRTAP5-3Q6L8H2 238 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 MIR17HGQ75NE6 70 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 C3orf56Q8N813 242 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 UHRF2Q96PU4 802 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 TXNDC17Q9BRA2 123 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 PAXXQ9BUH6 204 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 SCRT1Q9BWW7 348 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 NKX6-2Q9C056 277 aaPredicted RBP4.9□□□□□ -1.63
VPS53-209ENST00000570771 TMEM14CQ9P0S9 112 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 SELENOKQ9Y6D0 94 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 ARL2-SNX15V9GYD0 113 aa4.9□□□□□ -1.63
VPS53-209ENST00000570771 IGHV3OR16-8A0A075B7F1 116 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 IGHV7-4-1A0A0J9YVY3 117 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 RAB19A4D1S5 217 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 OVOL1O14753 267 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 ZNF207O43670 478 aaKnown RBP4.89□□□□□ -1.63
VPS53-209ENST00000570771 BUB3O43684 328 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 GCHFRP30047 84 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 SLURP1P55000 103 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 SPATA31B1PQ5VZV4 182 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 C16orf54Q6UWD8 224 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 SHISA2Q6UWI4 295 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 UNQ9165/PRO28630Q6UXU0 137 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 ADAMTSL5Q6ZMM2 481 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 OR9G4Q8NGQ1 327 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 LYPD6BQ8NI32 183 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 SUN5Q8TC36 379 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 RHPN1-AS1Q9BWJ2 59 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 SLC25A2Q9BXI2 301 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 SMDT1Q9H4I9 107 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 MED9Q9NWA0 146 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms