RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PSCAO43653 123 aa12.1□□□□□ -0.47
CLK3-227ENST00000570296 EVI2AP22794 236 aa12.1□□□□□ -0.47
CLK3-227ENST00000570296 PPP1R14BQ96C90 147 aa12.1□□□□□ -0.47
CLK3-227ENST00000570296 HEYLQ9NQ87 328 aaPredicted RBP12.1□□□□□ -0.47
CLK3-227ENST00000570296 H3BMQ9 156 aa12.09□□□□□ -0.47
CLK3-227ENST00000570296 RS1O15537 224 aa12.09□□□□□ -0.47
CLK3-227ENST00000570296 SPCS2Q15005 226 aa12.09□□□□□ -0.47
CLK3-227ENST00000570296 AARDQ4LEZ3 155 aa12.09□□□□□ -0.47
CLK3-227ENST00000570296 CCDC28AQ8IWP9 274 aa12.09□□□□□ -0.47
CLK3-227ENST00000570296 SNURFLB1AK76 121 aa12.08□□□□□ -0.48
CLK3-227ENST00000570296 NAT1P18440 290 aa12.08□□□□□ -0.48
CLK3-227ENST00000570296 LYZP61626 148 aa12.08□□□□□ -0.48
CLK3-227ENST00000570296 LYPD5Q6UWN5 251 aa12.08□□□□□ -0.48
CLK3-227ENST00000570296 OR52E5Q8NH55 327 aa12.08□□□□□ -0.48
CLK3-227ENST00000570296 TMEM170AQ8WVE7 144 aa12.08□□□□□ -0.48
CLK3-227ENST00000570296 RSG1Q9BU20 258 aa12.08□□□□□ -0.48
CLK3-227ENST00000570296 PPP1R14DQ9NXH3 145 aa12.08□□□□□ -0.48
CLK3-227ENST00000570296 ASIPP42127 132 aa12.07□□□□□ -0.48
CLK3-227ENST00000570296 UCP3P55916 312 aa12.07□□□□□ -0.48
CLK3-227ENST00000570296 RHOBP62745 196 aa12.07□□□□□ -0.48
CLK3-227ENST00000570296 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.07□□□□□ -0.48
CLK3-227ENST00000570296 NOXA1Q86UR1 476 aa12.07□□□□□ -0.48
CLK3-227ENST00000570296 C10orf126Q8N4M7 172 aa12.07□□□□□ -0.48
CLK3-227ENST00000570296 OR5H6Q8NGV6 325 aa12.07□□□□□ -0.48
CLK3-227ENST00000570296 C20orf144Q9BQM9 153 aa12.07□□□□□ -0.48
CLK3-227ENST00000570296 COMMD3Q9UBI1 195 aa12.07□□□□□ -0.48
CLK3-227ENST00000570296 FABP1P07148 127 aa12.06□□□□□ -0.48
CLK3-227ENST00000570296 CDKN1BP46527 198 aa12.06□□□□□ -0.48
CLK3-227ENST00000570296 KLF9Q13886 244 aaPredicted RBP12.06□□□□□ -0.48
CLK3-227ENST00000570296 UBE2NLQ5JXB2 153 aa12.06□□□□□ -0.48
CLK3-227ENST00000570296 SCXQ7RTU7 201 aa12.06□□□□□ -0.48
CLK3-227ENST00000570296 SAMD12Q8N8I0 201 aa12.06□□□□□ -0.48
CLK3-227ENST00000570296 S100A16Q96FQ6 103 aaKnown RBP12.06□□□□□ -0.48
CLK3-227ENST00000570296 RBM38Q9H0Z9 239 aaKnown RBP12.06□□□□□ -0.48
CLK3-227ENST00000570296 SLC25A32Q9H2D1 315 aa12.06□□□□□ -0.48
CLK3-227ENST00000570296 CCDC59Q9P031 241 aaKnown RBP12.06□□□□□ -0.48
CLK3-227ENST00000570296 TRAV8-2A0A0B4J237 113 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 ZFP92A6NM28 416 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 SNRPGP15A8MWD9 76 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 HRH1P35367 487 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 TSPAN5P62079 268 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 HIST1H1AQ02539 215 aaPredicted RBP12.05□□□□□ -0.48
CLK3-227ENST00000570296 ZNF90Q03938 601 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 DAZ2Q13117 558 aaKnown RBP12.05□□□□□ -0.48
CLK3-227ENST00000570296 Q6ZTI0 123 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 RNF182Q8N6D2 247 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 LRTM2Q8N967 370 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 ZNF738Q8NE65 137 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 DYNC2LI1Q8TCX1 351 aa12.05□□□□□ -0.48
CLK3-227ENST00000570296 TRGV2A0A075B6R0 118 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 FAM25AB3EWG3 89 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 FAM25CB3EWG5 89 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 FAM25GB3EWG6 89 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 PAX4O43316 350 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 MT1HL1P0DM35 61 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 RND3P61587 244 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 OR8A1Q8NGG7 326 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 TP53RKQ96S44 253 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 KRTAP9-2Q9BYQ4 174 aa12.04□□□□□ -0.48
CLK3-227ENST00000570296 IGKV1D-37A0A075B6S9 117 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 A0A0G2JRQ6 117 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 RGS5O15539 181 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 ZNF324O75467 553 aaPredicted RBP12.03□□□□□ -0.48
CLK3-227ENST00000570296 CRYGDP07320 174 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 OR5AC1P0C628 307 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 KIR3DS1Q14943 382 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 IGFL4Q6B9Z1 124 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 WFDC10BQ8IUB3 73 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 OR4D5Q8NGN0 318 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 OR1B1Q8NGR6 318 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 GPR82Q96P67 336 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 BATF3Q9NR55 127 aa12.03□□□□□ -0.48
CLK3-227ENST00000570296 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.03□□□□□ -0.48
CLK3-227ENST00000570296 TRAV5A0A0B4J249 113 aa12.02□□□□□ -0.49
CLK3-227ENST00000570296 APOA1P02647 267 aa12.02□□□□□ -0.49
CLK3-227ENST00000570296 NMSQ5H8A3 153 aa12.02□□□□□ -0.49
CLK3-227ENST00000570296 LYSMD2Q8IV50 215 aa12.02□□□□□ -0.49
CLK3-227ENST00000570296 RNASE11Q8TAA1 199 aaKnown RBP12.02□□□□□ -0.49
CLK3-227ENST00000570296 SLC25A22Q9H936 323 aa12.02□□□□□ -0.49
CLK3-227ENST00000570296 SLC45A2Q9UMX9 530 aa12.02□□□□□ -0.49
CLK3-227ENST00000570296 CEBPZOSA8MTT3 80 aa12.01□□□□□ -0.49
CLK3-227ENST00000570296 HPGDSO60760 199 aa12.01□□□□□ -0.49
CLK3-227ENST00000570296 HLA-DMAP28067 261 aa12.01□□□□□ -0.49
CLK3-227ENST00000570296 MRPL23Q16540 153 aaKnown RBP12.01□□□□□ -0.49
CLK3-227ENST00000570296 TRIM16LQ309B1 348 aa12.01□□□□□ -0.49
CLK3-227ENST00000570296 NEGR1Q7Z3B1 354 aa12.01□□□□□ -0.49
CLK3-227ENST00000570296 FAM219AQ8IW50 185 aa12.01□□□□□ -0.49
CLK3-227ENST00000570296 MCFD2Q8NI22 146 aa12.01□□□□□ -0.49
CLK3-227ENST00000570296 ZNF486Q96H40 463 aaPredicted RBP12.01□□□□□ -0.49
CLK3-227ENST00000570296 PSG3Q16557 428 aa12□□□□□ -0.49
CLK3-227ENST00000570296 SLIRPQ9GZT3 109 aaKnown RBP12□□□□□ -0.49
CLK3-227ENST00000570296 C3orf85A0A1B0GTC6 90 aa11.99□□□□□ -0.49
CLK3-227ENST00000570296 S100A5P33763 92 aa11.99□□□□□ -0.49
CLK3-227ENST00000570296 OR2F1Q13607 317 aa11.99□□□□□ -0.49
CLK3-227ENST00000570296 CHAC1Q9BUX1 264 aa11.99□□□□□ -0.49
CLK3-227ENST00000570296 PRO0255Q9UI72 69 aa11.99□□□□□ -0.49
CLK3-227ENST00000570296 GABARAPH6UMI1 98 aa11.98□□□□□ -0.49
CLK3-227ENST00000570296 CFDP00746 253 aaPredicted RBP11.98□□□□□ -0.49
CLK3-227ENST00000570296 PGAM2P15259 253 aa11.98□□□□□ -0.49
CLK3-227ENST00000570296 RCVRNP35243 200 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms