RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 HBE1P02100 147 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 S100A7P31151 101 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 UBE2MP61081 183 aaKnown RBP11.44□□□□□ -0.58
CLN3-229ENST00000567963 OXA1LQ15070 435 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 AMTNQ6UX39 209 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 ACOT7LQ6ZUV0 252 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 TMEM144Q7Z5S9 345 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 FAM210BQ96KR6 192 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 CCDC32Q9BV29 185 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 TMEM147Q9BVK8 224 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 LOC102723971A0A1B0GUV8 181 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 C9orf170A2RU37 121 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 ADAP1O75689 374 aa11.44□□□□□ -0.58
CLN3-229ENST00000567963 YTHDF2Q9Y5A9 579 aaKnown RBP11.44□□□□□ -0.58
CLN3-229ENST00000567963 POLR2GP62487 172 aaKnown RBP eCLIP11.43□□□□□ -0.58
CLN3-229ENST00000567963 RRN3P1Q2M238 152 aa11.43□□□□□ -0.58
CLN3-229ENST00000567963 IGF2BP2-AS1Q96M15 143 aa11.43□□□□□ -0.58
CLN3-229ENST00000567963 SLC25A39Q9BZJ4 359 aaPredicted RBP11.43□□□□□ -0.58
CLN3-229ENST00000567963 DNAH17Q9UFH2 4485 aa11.43□□□□□ -0.58
CLN3-229ENST00000567963 TRAV8-2A0A0B4J237 113 aa11.42□□□□□ -0.58
CLN3-229ENST00000567963 PMS2P5A8MQ11 134 aa11.42□□□□□ -0.58
CLN3-229ENST00000567963 M0R2N4 97 aa11.42□□□□□ -0.58
CLN3-229ENST00000567963 IFNA21P01568 189 aa11.42□□□□□ -0.58
CLN3-229ENST00000567963 IL5P05113 134 aa11.42□□□□□ -0.58
CLN3-229ENST00000567963 IGFL4Q6B9Z1 124 aa11.42□□□□□ -0.58
CLN3-229ENST00000567963 CYP2G1PQ6ZSU1 146 aa11.42□□□□□ -0.58
CLN3-229ENST00000567963 PSENENQ9NZ42 101 aa11.42□□□□□ -0.58
CLN3-229ENST00000567963 A0A1B0GVY2 172 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 SMCO3A2RU48 225 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 NAP1L6A6NFF2 107 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 H3BRN7 92 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 NDUFB6O95139 128 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 DUSP14O95147 198 aaKnown RBP11.41□□□□□ -0.58
CLN3-229ENST00000567963 IL7P13232 177 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 CNN1P51911 297 aaKnown RBP11.41□□□□□ -0.58
CLN3-229ENST00000567963 FGL1Q08830 312 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 BAK1Q16611 211 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 LGALS9BQ3B8N2 356 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 OR11H7Q8NGC8 314 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 SHANK2-AS3Q9BTD1 123 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 TMEM208Q9BTX3 173 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 FLVCR2Q9UPI3 526 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 KIAA1109Q2LD37 5005 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 PKHD1P08F94 4074 aa11.41□□□□□ -0.58
CLN3-229ENST00000567963 RTL8CO15255 209 aa11.4□□□□□ -0.58
CLN3-229ENST00000567963 CRXO43186 299 aaPredicted RBP11.4□□□□□ -0.58
CLN3-229ENST00000567963 OR4E1P0C645 316 aa11.4□□□□□ -0.58
CLN3-229ENST00000567963 HTN3P15516 51 aa11.4□□□□□ -0.58
CLN3-229ENST00000567963 PLP1P60201 277 aa11.4□□□□□ -0.58
CLN3-229ENST00000567963 RAP2BP61225 183 aa11.4□□□□□ -0.58
CLN3-229ENST00000567963 SPINK13Q1W4C9 94 aa11.4□□□□□ -0.58
CLN3-229ENST00000567963 RNF182Q8N6D2 247 aa11.4□□□□□ -0.58
CLN3-229ENST00000567963 SMIM8Q96KF7 97 aa11.4□□□□□ -0.58
CLN3-229ENST00000567963 HIGD1AQ9Y241 93 aa11.4□□□□□ -0.58
CLN3-229ENST00000567963 M0R2Z0 102 aa11.39□□□□□ -0.59
CLN3-229ENST00000567963 SSSCA1O60232 199 aa11.39□□□□□ -0.59
CLN3-229ENST00000567963 HYPMO75409 117 aa11.39□□□□□ -0.59
CLN3-229ENST00000567963 PRM2P04554 102 aa11.39□□□□□ -0.59
CLN3-229ENST00000567963 RPL7P18124 248 aaKnown RBP11.39□□□□□ -0.59
CLN3-229ENST00000567963 INPP1P49441 399 aa11.39□□□□□ -0.59
CLN3-229ENST00000567963 DAD1P61803 113 aa11.39□□□□□ -0.59
CLN3-229ENST00000567963 PRSS29PA6NIE9 313 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 UPK1BO75841 260 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 CCNKO75909 580 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 OR5G3P0C626 314 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 LINC00869P0C866 280 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 SELENOTP62341 195 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 UBE2DNLQ8IWF7 75 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 UHRF2Q96PU4 802 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 NPVFQ9HCQ7 196 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 ZNF705GA8MUZ8 300 aaPredicted RBP11.38□□□□□ -0.59
CLN3-229ENST00000567963 INSP01308 110 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 B2MP61769 119 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 RRAS2P62070 204 aaPredicted RBP11.38□□□□□ -0.59
CLN3-229ENST00000567963 DLK1P80370 383 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 IFITM3Q01628 133 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 RNF212Q495C1 297 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 TRIQKQ629K1 86 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 TMEM14EPQ6UXP3 125 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 ZNF738Q8NE65 137 aa11.38□□□□□ -0.59
CLN3-229ENST00000567963 PKD1P98161 4303 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 IGLV2-18A0A075B6J9 118 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 FNDC10F2Z333 226 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 METTL15P1P0C7V9 234 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 CXCL3P19876 107 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 C4orf46Q504U0 113 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 TMEM88Q6PEY1 159 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 Q6ZR54 194 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 BAP18Q8IXM2 172 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 OR10P1Q8NGE3 313 aa11.37□□□□□ -0.59
CLN3-229ENST00000567963 TRAV12-2A0A075B6T6 113 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 A0A087X0K7 114 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 LINC00854A0A1B0GVQ3 168 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 LYRM9A8MSI8 78 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 K7EPK0 472 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 ANXA7P20073 488 aaKnown RBP11.36□□□□□ -0.59
CLN3-229ENST00000567963 TSPOP30536 169 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 BTCP35070 178 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 TAS2R30P59541 319 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 TEPPQ6URK8 271 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms