RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 LYZL2Q7Z4W2 148 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 C12orf45Q8N5I9 185 aaPredicted RBP7.23□□□□□ -1.25
SF3B3-204ENST00000563739 LRTM2Q8N967 370 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 GPR146Q96CH1 333 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 SLC35B3Q9H1N7 401 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 PAIP2BQ9ULR5 123 aaKnown RBP7.23□□□□□ -1.25
SF3B3-204ENST00000563739 YTHDF2Q9Y5A9 579 aaKnown RBP7.23□□□□□ -1.25
SF3B3-204ENST00000563739 RFNGQ9Y644 331 aa7.23□□□□□ -1.25
SF3B3-204ENST00000563739 PLAC8L1A1L4L8 177 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 C9orf170A2RU37 121 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 TMEM189A5PLL7 270 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 A8MTW9 85 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 EPM2AB3EWF7 344 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 RGS13O14921 159 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 IGLC1P0CG04 106 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 OR4X1Q8NH49 305 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 TMEM170AQ8WVE7 144 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 ASB13Q8WXK3 278 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 METTL26Q96S19 204 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 PDCD10Q9BUL8 212 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 C1QTNF4Q9BXJ3 329 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 TMEM231Q9H6L2 316 aa7.22□□□□□ -1.25
SF3B3-204ENST00000563739 A0A1W2PS18 150 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 SMIM9A6NGZ8 99 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 G3V3Q6 166 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 GOSR2O14653 212 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 HOXA1P49639 335 aaPredicted RBP7.21□□□□□ -1.26
SF3B3-204ENST00000563739 SMCO1Q147U7 214 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 Q5BKY6 102 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 Q6ZRN7 208 aaPredicted RBP7.21□□□□□ -1.26
SF3B3-204ENST00000563739 LYPD1Q8N2G4 141 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 C9orf62Q8N4C0 152 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 OR11H4Q8NGC9 324 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 OR2T35Q8NGX2 323 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 OR52E5Q8NH55 327 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 COQ8AQ8NI60 647 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 MITD1Q8WV92 249 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 C17orf77Q96MU5 243 aa7.21□□□□□ -1.26
SF3B3-204ENST00000563739 SEPSECSQ9HD40 501 aaKnown RBP7.21□□□□□ -1.26
SF3B3-204ENST00000563739 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.21□□□□□ -1.26
SF3B3-204ENST00000563739 IGHV3OR16-12A0A075B7B8 117 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 LOC102723971A0A1B0GUV8 181 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 BUB3O43684 328 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 IGKV3-20P01619 116 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 BTF3P20290 206 aaKnown RBP7.2□□□□□ -1.26
SF3B3-204ENST00000563739 NKX2-1P43699 371 aaPredicted RBP7.2□□□□□ -1.26
SF3B3-204ENST00000563739 H2BFSP57053 126 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 SPCS3P61009 180 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 Q5VSD8 79 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 AMTNQ6UX39 209 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 C15orf53Q8NAA6 179 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 CLUHP3Q96NS8 147 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 SAV1Q9H4B6 383 aaPredicted RBP7.2□□□□□ -1.26
SF3B3-204ENST00000563739 NRN1Q9NPD7 142 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 TMED3Q9Y3Q3 217 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 HSPB11Q9Y547 144 aa7.2□□□□□ -1.26
SF3B3-204ENST00000563739 TEX48A0A1B0GUV7 120 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 F6UB75 175 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 PITX3O75364 302 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 SIX6O95475 246 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 HOXB5P09067 269 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 SLC25A6P12236 298 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 ERHP84090 104 aaKnown RBP7.19□□□□□ -1.26
SF3B3-204ENST00000563739 LGALSLQ3ZCW2 172 aaPredicted RBP7.19□□□□□ -1.26
SF3B3-204ENST00000563739 GGNBP1Q5YKI7 109 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 OR1S1Q8NH92 325 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 RNF141Q8WVD5 230 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 ENY2Q9NPA8 101 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 HSPB7Q9UBY9 170 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 CACFD1Q9UGQ2 172 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 PKHD1L1Q86WI1 4243 aa7.19□□□□□ -1.26
SF3B3-204ENST00000563739 CEBPZOSA8MTT3 80 aa7.18□□□□□ -1.26
SF3B3-204ENST00000563739 CRXO43186 299 aaPredicted RBP7.18□□□□□ -1.26
SF3B3-204ENST00000563739 ADAP1O75689 374 aa7.18□□□□□ -1.26
SF3B3-204ENST00000563739 SNCAP37840 140 aa7.18□□□□□ -1.26
SF3B3-204ENST00000563739 PRSS54Q6PEW0 395 aa7.18□□□□□ -1.26
SF3B3-204ENST00000563739 C20orf173Q96LM9 149 aa7.18□□□□□ -1.26
SF3B3-204ENST00000563739 HMSDA8MTL9 139 aa7.17□□□□□ -1.26
SF3B3-204ENST00000563739 PAX9P55771 341 aa7.17□□□□□ -1.26
SF3B3-204ENST00000563739 DAD1P61803 113 aa7.17□□□□□ -1.26
SF3B3-204ENST00000563739 NUTF2P61970 127 aaKnown RBP7.17□□□□□ -1.26
SF3B3-204ENST00000563739 SIGLEC15Q6ZMC9 328 aa7.17□□□□□ -1.26
SF3B3-204ENST00000563739 FOXI2Q6ZQN5 318 aa7.17□□□□□ -1.26
SF3B3-204ENST00000563739 SLC24A4Q8NFF2 622 aa7.17□□□□□ -1.26
SF3B3-204ENST00000563739 Q9H3A6 140 aa7.17□□□□□ -1.26
SF3B3-204ENST00000563739 RBKSQ9H477 322 aa7.17□□□□□ -1.26
SF3B3-204ENST00000563739 HEYLQ9NQ87 328 aaPredicted RBP7.17□□□□□ -1.26
SF3B3-204ENST00000563739 A0A0J9YX75 114 aa7.16□□□□□ -1.26
SF3B3-204ENST00000563739 CORTO00230 105 aa7.16□□□□□ -1.26
SF3B3-204ENST00000563739 CCSO14618 274 aa7.16□□□□□ -1.26
SF3B3-204ENST00000563739 IL4P05112 153 aa7.16□□□□□ -1.26
SF3B3-204ENST00000563739 OPRK1P41145 380 aa7.16□□□□□ -1.26
SF3B3-204ENST00000563739 HTR2BP41595 481 aa7.16□□□□□ -1.26
SF3B3-204ENST00000563739 RND2P52198 227 aa7.16□□□□□ -1.26
SF3B3-204ENST00000563739 SUB1P53999 127 aaKnown RBP eCLIP7.16□□□□□ -1.262e-7■□□□□ 11.2
SF3B3-204ENST00000563739 KRTAP10-1P60331 282 aa7.16□□□□□ -1.26
SF3B3-204ENST00000563739 YPEL3P61236 119 aaPredicted RBP7.16□□□□□ -1.26
SF3B3-204ENST00000563739 SNRPD3P62318 126 aaKnown RBP7.16□□□□□ -1.26
SF3B3-204ENST00000563739 FGL1Q08830 312 aa7.16□□□□□ -1.26
SF3B3-204ENST00000563739 NDUFA5Q16718 116 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms