RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 SPANXA1Q9NS26 97 aa0.66□□□□□ -2.3
HMGB1P33-201ENST00000563485 SS18L2Q9UHA2 77 aa0.66□□□□□ -2.3
HMGB1P33-201ENST00000563485 PCTPQ9UKL6 214 aa0.66□□□□□ -2.3
HMGB1P33-201ENST00000563485 PCDH15Q96QU1 1955 aa0.66□□□□□ -2.3
HMGB1P33-201ENST00000563485 ARAP1Q96P48 1450 aa0.66□□□□□ -2.3
HMGB1P33-201ENST00000563485 COL4A1P02462 1669 aa0.65□□□□□ -2.3
HMGB1P33-201ENST00000563485 FREM3P0C091 2139 aa0.65□□□□□ -2.3
HMGB1P33-201ENST00000563485 TRAPPC8Q9Y2L5 1435 aa0.65□□□□□ -2.3
HMGB1P33-201ENST00000563485 SCN8AQ9UQD0 1980 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 MED13Q9UHV7 2174 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 C17orf112F2Z3M2 114 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 HIST1H2BKO60814 126 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 TIMM17BO60830 172 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 CRPP02741 224 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 IFNA4P05014 189 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 HIST1H2BJP06899 126 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR10J4P0C629 311 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 ASAH2BP0C7U1 165 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 GLRXP35754 106 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 INSL3P51460 131 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 KRTAP10-4P60372 401 aaPredicted RBP0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 LTC4SQ16873 150 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 C1orf137Q5JT78 98 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 FAM24BQ8N5W8 94 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR9Q1Q8NGQ5 310 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 ZNF418Q8TF45 676 aaPredicted RBP0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 SFT2D1Q8WV19 159 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 MCEEQ96PE7 176 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 SLC25A21Q9BQT8 299 aaPredicted RBP0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 ADAT1Q9BUB4 502 aaKnown RBP0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 CCDC32Q9BV29 185 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 NPCDR1Q9BY65 106 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR2H1Q9GZK4 316 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 LRTM1Q9HBL6 345 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 SPANXCQ9NY87 97 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR52A1Q9UKL2 312 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 LAMTOR2Q9Y2Q5 125 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 CHCHD2Q9Y6H1 151 aaPredicted RBP0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 LY96Q9Y6Y9 160 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 NUP98P52948 1817 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 RFX7Q2KHR2 1363 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 RTL9Q8NET4 1388 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 PIK3C2AO00443 1686 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 MYH10P35580 1976 aa0.65□□□□□ -2.31
HMGB1P33-201ENST00000563485 KIAA1107Q9UPP5 1409 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 TRAV1-1A0A0B4J248 108 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 TRBV7-6A0A0J9YX20 115 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 GNG14A0A1W2PPG7 69 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 H0YJX3 145 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 INE1O15225 51 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 HYPMO75409 117 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 BANF1O75531 89 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 IGLV1-51P01701 117 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 UBBP0CG47 229 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 BCL2P10415 239 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 BRS3P32247 399 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 ZNF93P35789 620 aaPredicted RBP0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 RAB5CP51148 216 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 DEFA3P59666 94 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 SOSTDC1Q6X4U4 206 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 LINC00301Q8NCQ3 95 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR5D16Q8NGK9 328 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 THEM6Q8WUY1 208 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 SKA2Q8WVK7 121 aaPredicted RBP0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 PYDC1Q8WXC3 89 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 LINC00526Q96FQ7 95 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 CARD19Q96LW7 228 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 RETNLBQ9BQ08 111 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 CACYBPQ9HB71 228 aaKnown RBP0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 RASL12Q9NYN1 266 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 ASB4Q9Y574 426 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 CEP164Q9UPV0 1460 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 CCDC88AQ3V6T2 1871 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 KIAA1549Q9HCM3 1950 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 TAF1LQ8IZX4 1826 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 BCL9O00512 1426 aa0.64□□□□□ -2.31
HMGB1P33-201ENST00000563485 TECTAO75443 2155 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 EXPH5Q8NEV8 1989 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 FRMPD1Q5SYB0 1578 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 ANKRD30AQ9BXX3 1397 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 TRAV27A0A087WT01 109 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 A0A087WX48 190 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 TRAV14DV4A0A0A6YYC5 116 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 IGKV3D-7A0A0C4DH55 119 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 IGKV3OR2-268A0A0C4DH90 116 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 TRDV1A0A1B0GX56 115 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 H7BYZ3 331 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 HCRTO43612 131 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 CST7O76096 145 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 GADD45GO95257 159 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 MGST1P10620 155 aaKnown RBP0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 IL9P15248 144 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 RPL35P42766 123 aaKnown RBP0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 HBBP68871 147 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 PSG9Q00887 426 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 EIF3IQ13347 325 aaKnown RBP0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 DEFB113Q30KQ7 82 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 TMEM128Q5BJH2 165 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 C2orf82Q6UX34 121 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 C4orf22Q6V702 233 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms