RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 ZNF343Q6P1L6 599 aa13.96□□□□□ -0.17
COMMD4-208ENST00000563220 TOMM20LQ6UXN7 152 aa13.96□□□□□ -0.17
COMMD4-208ENST00000563220 PARLQ9H300 379 aa13.96□□□□□ -0.17
COMMD4-208ENST00000563220 GNB4Q9HAV0 340 aa13.96□□□□□ -0.17
COMMD4-208ENST00000563220 IGHV3OR16-8A0A075B7F1 116 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 SCO2A0A1W2PP80 73 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 A0A1W2PRE2 83 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 PPP5D1E7EU14 171 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 IGHG4P01861 327 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 FABP9Q0Z7S8 132 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 ATP6V0BQ99437 205 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 CTDSP1Q9GZU7 261 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 GGTLC3B5MD39 225 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 F6UZH7 168 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 NDUFB4O95168 129 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 TRBV12-3P01733 135 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 IGHV3-11P01762 117 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 PSMB8P28062 276 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 ZFAND3Q9H8U3 227 aa13.95□□□□□ -0.18
COMMD4-208ENST00000563220 NBEAP1P0C6P0 100 aa13.94□□□□□ -0.18
COMMD4-208ENST00000563220 HNF1AP20823 631 aa13.94□□□□□ -0.18
COMMD4-208ENST00000563220 RPS10P46783 165 aaKnown RBP13.94□□□□□ -0.18
COMMD4-208ENST00000563220 SUMO1P63165 101 aaKnown RBP13.94□□□□□ -0.18
COMMD4-208ENST00000563220 SMIM7Q9BQ49 75 aa13.94□□□□□ -0.18
COMMD4-208ENST00000563220 DERL1Q9BUN8 251 aa13.94□□□□□ -0.18
COMMD4-208ENST00000563220 ESM1Q9NQ30 184 aa13.94□□□□□ -0.18
COMMD4-208ENST00000563220 TMEM14CQ9P0S9 112 aa13.94□□□□□ -0.18
COMMD4-208ENST00000563220 CLDN34H7C241 214 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 Q8N2B8 174 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 BLNKQ8WV28 456 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 OTOGQ6ZRI0 2925 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.93□□□□□ -0.18
COMMD4-208ENST00000563220 DNAJC9-AS1A6NH13 148 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 H3BTX0 84 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 LY6G6DO95868 133 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 S100A9P06702 114 aaKnown RBP13.93□□□□□ -0.18
COMMD4-208ENST00000563220 CXCL1P09341 107 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 TMEM160Q9NX00 188 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 NAT8Q9UHE5 227 aa13.93□□□□□ -0.18
COMMD4-208ENST00000563220 A0A0G2JLM5 398 aa13.92□□□□□ -0.18
COMMD4-208ENST00000563220 MRPS12O15235 138 aaKnown RBP13.92□□□□□ -0.18
COMMD4-208ENST00000563220 ARL3P36405 182 aa13.92□□□□□ -0.18
COMMD4-208ENST00000563220 OR4X2Q8NGF9 303 aa13.92□□□□□ -0.18
COMMD4-208ENST00000563220 ELOVL1Q9BW60 279 aa13.92□□□□□ -0.18
COMMD4-208ENST00000563220 ZNF586Q9NXT0 402 aa13.92□□□□□ -0.18
COMMD4-208ENST00000563220 RABAC1Q9UI14 185 aa13.92□□□□□ -0.18
COMMD4-208ENST00000563220 CLPSL1A2RUU4 121 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 PCP4L1A6NKN8 68 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 BMPR1BO00238 502 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 CRYBB3P26998 211 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 RANP62826 216 aaKnown RBP13.91□□□□□ -0.18
COMMD4-208ENST00000563220 RELQ04864 619 aaPredicted RBP13.91□□□□□ -0.18
COMMD4-208ENST00000563220 BPIFA4PQ86YQ2 179 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 C11orf52Q96A22 123 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 TRBV24-1A0A075B6N3 115 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 TMEM89A2RUT3 159 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 FAM181BA6NEQ2 426 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 HIST1H1EP10412 219 aaKnown RBP13.91□□□□□ -0.18
COMMD4-208ENST00000563220 HOXA5P20719 270 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 MYCNOSP40205 109 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 TMEM241Q24JQ0 296 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 S100A7AQ86SG5 101 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 SERTAD4Q9NUC0 356 aa13.91□□□□□ -0.18
COMMD4-208ENST00000563220 C17orf77Q96MU5 243 aa13.9□□□□□ -0.18
COMMD4-208ENST00000563220 TGIF2-C20orf24A0A0A6YYL0 155 aa13.89□□□□□ -0.19
COMMD4-208ENST00000563220 IGLC2P0DOY2 106 aa13.89□□□□□ -0.19
COMMD4-208ENST00000563220 RPL15P61313 204 aaKnown RBP13.89□□□□□ -0.19
COMMD4-208ENST00000563220 TEX38Q6PEX7 206 aa13.89□□□□□ -0.19
COMMD4-208ENST00000563220 TRBV20OR9-2A0A075B6H5 130 aa13.89□□□□□ -0.19
COMMD4-208ENST00000563220 PGPA6NDG6 321 aa13.89□□□□□ -0.19
COMMD4-208ENST00000563220 RPLP1P05386 114 aaKnown RBP13.89□□□□□ -0.19
COMMD4-208ENST00000563220 SLC35B1P78383 322 aa13.89□□□□□ -0.19
COMMD4-208ENST00000563220 FAM210BQ96KR6 192 aa13.89□□□□□ -0.19
COMMD4-208ENST00000563220 OR5B12Q96R08 314 aa13.89□□□□□ -0.19
COMMD4-208ENST00000563220 URGCP-MRPS24S4R325 110 aa13.89□□□□□ -0.19
COMMD4-208ENST00000563220 RPL23P62829 140 aaKnown RBP13.88□□□□□ -0.19
COMMD4-208ENST00000563220 FOXE3Q13461 319 aa13.88□□□□□ -0.19
COMMD4-208ENST00000563220 Q6ZSV7 163 aa13.88□□□□□ -0.19
COMMD4-208ENST00000563220 OR4F17Q8NGA8 305 aa13.88□□□□□ -0.19
COMMD4-208ENST00000563220 TRBV19A0A075B6N1 114 aa13.87□□□□□ -0.19
COMMD4-208ENST00000563220 ZNF207O43670 478 aaKnown RBP13.87□□□□□ -0.19
COMMD4-208ENST00000563220 APOHP02749 345 aaPredicted RBP13.87□□□□□ -0.19
COMMD4-208ENST00000563220 ELANEP08246 267 aa13.87□□□□□ -0.19
COMMD4-208ENST00000563220 SRD5A1P18405 259 aa13.87□□□□□ -0.19
COMMD4-208ENST00000563220 CDX1P47902 265 aaPredicted RBP13.87□□□□□ -0.19
COMMD4-208ENST00000563220 UNQ9165/PRO28630Q6UXU0 137 aa13.87□□□□□ -0.19
COMMD4-208ENST00000563220 Q9H3A6 140 aa13.87□□□□□ -0.19
COMMD4-208ENST00000563220 BUB3O43684 328 aa13.87□□□□□ -0.19
COMMD4-208ENST00000563220 ADIRFQ15847 76 aa13.87□□□□□ -0.19
COMMD4-208ENST00000563220 PYGO2Q9BRQ0 406 aa13.87□□□□□ -0.19
COMMD4-208ENST00000563220 SMAD5-AS1Q9Y6J3 95 aa13.87□□□□□ -0.19
COMMD4-208ENST00000563220 CUBNO60494 3623 aa13.86□□□□□ -0.19
COMMD4-208ENST00000563220 PGPEP1LA6NFU8 196 aa13.86□□□□□ -0.19
COMMD4-208ENST00000563220 NDUFA4O00483 81 aa13.86□□□□□ -0.19
COMMD4-208ENST00000563220 OR8I2Q8N0Y5 310 aa13.86□□□□□ -0.19
COMMD4-208ENST00000563220 MYOZ3Q8TDC0 251 aa13.86□□□□□ -0.19
COMMD4-208ENST00000563220 AURKAIP1Q9NWT8 199 aaPredicted RBP13.86□□□□□ -0.19
COMMD4-208ENST00000563220 PEF1Q9UBV8 284 aaKnown RBP13.86□□□□□ -0.19
COMMD4-208ENST00000563220 MTORP42345 2549 aa13.85□□□□□ -0.19
COMMD4-208ENST00000563220 IGHV3OR16-13A0A075B7E8 117 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms