RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ADAMTSL5Q6ZMM2 481 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 BPIFA4PQ86YQ2 179 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 C9orf62Q8N4C0 152 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 STOML3Q8TAV4 291 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 TMEM37Q8WXS4 190 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 SPAG8Q99932 426 aaPredicted RBP6.98□□□□□ -1.29
LDLR-210ENST00000559340 SLC25A32Q9H2D1 315 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 SLC25A22Q9H936 323 aa6.98□□□□□ -1.29
LDLR-210ENST00000559340 IGHV3-66A0A0C4DH42 116 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 APOHP02749 345 aaPredicted RBP6.97□□□□□ -1.29
LDLR-210ENST00000559340 SPP1P10451 314 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 ID1P41134 155 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 TMEM41BQ5BJD5 291 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 SAMD5Q5TGI4 173 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 FAM90A2PQ658T7 463 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 OR10G4Q8NGN3 311 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 OR10G9Q8NGN4 311 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 OR10G7Q8NGN6 311 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 GLMPQ8WWB7 406 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 ACTR3CQ9C0K3 210 aaPredicted RBP6.97□□□□□ -1.29
LDLR-210ENST00000559340 SEPSECSQ9HD40 501 aaKnown RBP6.97□□□□□ -1.29
LDLR-210ENST00000559340 FUT9Q9Y231 359 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 ZNF256Q9Y2P7 627 aaPredicted RBP6.97□□□□□ -1.29
LDLR-210ENST00000559340 VWFP04275 2813 aa6.97□□□□□ -1.29
LDLR-210ENST00000559340 GP9P14770 177 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 CDC34P49427 236 aaPredicted RBP6.96□□□□□ -1.3
LDLR-210ENST00000559340 RAB5CP51148 216 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 DEFA6Q01524 100 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 EGFEM1PQ0D2K5 195 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 KHDC3LQ587J8 217 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 DPPA3Q6W0C5 159 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 GTSCR1Q86UQ5 136 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 TMEM61Q8N0U2 210 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 LRRC20Q8TCA0 184 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 UHRF2Q96PU4 802 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 SCRT1Q9BWW7 348 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 NRN1Q9NPD7 142 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 CLEC5AQ9NY25 188 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 TMEM14CQ9P0S9 112 aa6.96□□□□□ -1.3
LDLR-210ENST00000559340 TRRAPQ9Y4A5 3859 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 G3V4G9 280 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 EDN2P20800 178 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 SNRPD3P62318 126 aaKnown RBP6.95□□□□□ -1.3
LDLR-210ENST00000559340 GUK1Q16774 197 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 FAM122CQ6P4D5 195 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 PQLC2Q6ZP29 291 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 PHYHIPLQ96FC7 376 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 SH3BGRL3Q9H299 93 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 OR51M1Q9H341 326 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 MEGF8Q7Z7M0 2845 aa6.95□□□□□ -1.3
LDLR-210ENST00000559340 IGKV3-7A0A075B6H7 116 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 A0A087X0K7 114 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 CTXND1A0A1B0GTU2 59 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 TEX46H3BTG2 121 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 OR7C2O60412 319 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 HIST1H1EP10412 219 aaKnown RBP6.94□□□□□ -1.3
LDLR-210ENST00000559340 NKX2-5P52952 324 aaPredicted RBP6.94□□□□□ -1.3
LDLR-210ENST00000559340 RAB2AP61019 212 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 BEAN1Q3B7T3 259 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 GCSAMLQ5JQS6 135 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 KPRPQ5T749 579 aaPredicted RBP6.94□□□□□ -1.3
LDLR-210ENST00000559340 LEMD1Q68G75 181 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 LCN15Q6UWW0 184 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 MIR17HGQ75NE6 70 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 WFDC3Q8IUB2 231 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 GBGT1Q8N5D6 347 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 FAM110AQ9BQ89 295 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 SLC50A1Q9BRV3 221 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 PAXXQ9BUH6 204 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 MS4A6AQ9H2W1 248 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 HRH4Q9H3N8 390 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 RPRMQ9NS64 109 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 PKD1L1Q8TDX9 2849 aa6.94□□□□□ -1.3
LDLR-210ENST00000559340 AGRNO00468 2067 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 TRAV5A0A0B4J249 113 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 IZUMO1RA6ND01 250 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 K7EQG2 157 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 ISLRO14498 428 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 ZNF253O75346 499 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 CXorf1O96002 111 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 TFPI2P48307 235 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 PSG9Q00887 426 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 PDE6HQ13956 83 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 RPP25LQ8N5L8 163 aaKnown RBP6.93□□□□□ -1.3
LDLR-210ENST00000559340 TMED6Q8WW62 240 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 RAB24Q969Q5 203 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 C16orf92Q96LL3 132 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 RFNGQ9Y644 331 aa6.93□□□□□ -1.3
LDLR-210ENST00000559340 OR11H12B2RN74 326 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 NBEAP1P0C6P0 100 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 STAG3L2P0CL84 134 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 STAG3L3P0CL85 134 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 PSMB3P49720 205 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 SULT1A2P50226 295 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 CD81P60033 236 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 SPATA31B1PQ5VZV4 182 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 RNF141Q8WVD5 230 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 FAM167A-AS1Q96KT0 104 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 SLC25A2Q9BXI2 301 aa6.92□□□□□ -1.3
LDLR-210ENST00000559340 AAMDCQ9H7C9 122 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms