RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 PEF1Q9UBV8 284 aaKnown RBP12.93□□□□□ -0.34
SHMT2-231ENST00000557433 RBP4P02753 201 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 WFDC8Q8IUA0 241 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 SRSF12Q8WXF0 261 aaKnown RBP12.92□□□□□ -0.34
SHMT2-231ENST00000557433 INSIG2Q9Y5U4 225 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 MUC21A0A0G2JKD1 596 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 MUC21A0A140T8X8 626 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 H3BRN7 92 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 IGLV1-47P01700 117 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 CD24P25063 80 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 ARF6P62330 175 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 PSG3Q16557 428 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 C21orf62-AS1Q17RA5 79 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 MUC21Q5SSG8 566 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 PRSS3P2Q8NHM4 247 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 PSG8Q9UQ74 426 aa12.92□□□□□ -0.34
SHMT2-231ENST00000557433 TRAV8-1A0A0A6YYK1 113 aa12.91□□□□□ -0.34
SHMT2-231ENST00000557433 IGHV1-3A0A0C4DH29 117 aa12.91□□□□□ -0.34
SHMT2-231ENST00000557433 H3BTX0 84 aa12.91□□□□□ -0.34
SHMT2-231ENST00000557433 BSPH1Q075Z2 132 aa12.91□□□□□ -0.34
SHMT2-231ENST00000557433 PDE6HQ13956 83 aa12.91□□□□□ -0.34
SHMT2-231ENST00000557433 COTL1Q14019 142 aa12.91□□□□□ -0.34
SHMT2-231ENST00000557433 EXOC3-AS1Q8N2X6 119 aa12.91□□□□□ -0.34
SHMT2-231ENST00000557433 ZC2HC1AQ96GY0 325 aa12.91□□□□□ -0.34
SHMT2-231ENST00000557433 FBLL1A6NHQ2 334 aaKnown RBP12.9□□□□□ -0.34
SHMT2-231ENST00000557433 ARMS2P0C7Q2 107 aa12.9□□□□□ -0.34
SHMT2-231ENST00000557433 RNASE6Q93091 150 aaKnown RBP12.9□□□□□ -0.34
SHMT2-231ENST00000557433 U3KQK5 164 aa12.9□□□□□ -0.34
SHMT2-231ENST00000557433 IGHV3-72A0A0B4J1Y9 119 aa12.9□□□□□ -0.35
SHMT2-231ENST00000557433 CT45A10P0DMU9 189 aa12.9□□□□□ -0.35
SHMT2-231ENST00000557433 PSMG4Q5JS54 123 aa12.9□□□□□ -0.35
SHMT2-231ENST00000557433 SIGLEC15Q6ZMC9 328 aa12.9□□□□□ -0.35
SHMT2-231ENST00000557433 DEFB124Q8NES8 71 aa12.9□□□□□ -0.35
SHMT2-231ENST00000557433 ZNF785A8K8V0 405 aa12.89□□□□□ -0.35
SHMT2-231ENST00000557433 BUB1B-PAK6H3BSN5 160 aa12.89□□□□□ -0.35
SHMT2-231ENST00000557433 IGKV1-17P01599 117 aa12.89□□□□□ -0.35
SHMT2-231ENST00000557433 LGALS9BQ3B8N2 356 aa12.89□□□□□ -0.35
SHMT2-231ENST00000557433 LGALS9CQ6DKI2 356 aa12.89□□□□□ -0.35
SHMT2-231ENST00000557433 LHFPL4Q7Z7J7 247 aa12.89□□□□□ -0.35
SHMT2-231ENST00000557433 CST9LQ9H4G1 147 aa12.89□□□□□ -0.35
SHMT2-231ENST00000557433 RALYQ9UKM9 306 aaKnown RBP12.89□□□□□ -0.35
SHMT2-231ENST00000557433 NAV3Q8IVL0 2385 aa12.89□□□□□ -0.35
SHMT2-231ENST00000557433 IGHV3-21A0A0B4J1V1 117 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 CSN3P07498 182 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 ZNF138P52744 262 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 PLGLAQ15195 96 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 NPFFR1Q9GZQ6 430 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 RAB1BQ9H0U4 201 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 DYNLRB1Q9NP97 96 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 SPAARA0A1B0GVQ0 90 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 OR2T8A6NH00 312 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 THBDP07204 575 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 CNTFRP26992 372 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 COX8CQ7Z4L0 72 aa12.88□□□□□ -0.35
SHMT2-231ENST00000557433 PRRG2O14669 202 aa12.87□□□□□ -0.35
SHMT2-231ENST00000557433 SIVA1O15304 175 aa12.87□□□□□ -0.35
SHMT2-231ENST00000557433 OCIAD2Q56VL3 154 aa12.87□□□□□ -0.35
SHMT2-231ENST00000557433 TMEM97Q5BJF2 176 aa12.87□□□□□ -0.35
SHMT2-231ENST00000557433 C2orf91Q6ZV80 131 aa12.87□□□□□ -0.35
SHMT2-231ENST00000557433 JKAMPQ9P055 326 aa12.87□□□□□ -0.35
SHMT2-231ENST00000557433 PLCE1Q9P212 2302 aa12.87□□□□□ -0.35
SHMT2-231ENST00000557433 A0A087X0K7 114 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 A0A0G2JNJ9 132 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 APOBEC3AP31941 199 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-231ENST00000557433 PSG9Q00887 426 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 PRR31Q5SQ13 230 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 AMMECR1LQ6DCA0 310 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 OR9G4Q8NGQ1 327 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 RPEQ96AT9 228 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 RNF125Q96EQ8 232 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 AAMDCQ9H7C9 122 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 Q9UFV3 132 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 WI2-2373I1.2A0A1W2PRP0 233 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 A6NDN8 102 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 CBY3A6NI87 242 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 K7EIM0 57 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 MRPS12O15235 138 aaKnown RBP12.86□□□□□ -0.35
SHMT2-231ENST00000557433 SMIM15Q7Z3B0 74 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 ORMDL3Q8N138 153 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 ZNF491Q8N8L2 437 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 PRSS33Q8NF86 280 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 ZNF414Q96IQ9 312 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 ZNF48Q96MX3 618 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-231ENST00000557433 FBXL15Q9H469 300 aa12.86□□□□□ -0.35
SHMT2-231ENST00000557433 VPS13AQ96RL7 3174 aa12.85□□□□□ -0.35
SHMT2-231ENST00000557433 H0Y8G0 127 aa12.85□□□□□ -0.35
SHMT2-231ENST00000557433 K7ERU9 68 aa12.85□□□□□ -0.35
SHMT2-231ENST00000557433 FAM104BQ5XKR9 115 aa12.85□□□□□ -0.35
SHMT2-231ENST00000557433 TP73-AS1Q9UF72 201 aa12.85□□□□□ -0.35
SHMT2-231ENST00000557433 C7orf71A4D174 169 aa12.84□□□□□ -0.35
SHMT2-231ENST00000557433 H3BRM9 83 aa12.84□□□□□ -0.35
SHMT2-231ENST00000557433 APELAP0DMC3 54 aa12.84□□□□□ -0.35
SHMT2-231ENST00000557433 CRIP1P50238 77 aa12.84□□□□□ -0.35
SHMT2-231ENST00000557433 GTF2H5Q6ZYL4 71 aa12.84□□□□□ -0.35
SHMT2-231ENST00000557433 COL25A1Q9BXS0 654 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-231ENST00000557433 TMEM189A5PLL7 270 aa12.84□□□□□ -0.35
SHMT2-231ENST00000557433 FGF6P10767 208 aa12.84□□□□□ -0.35
SHMT2-231ENST00000557433 LDLRAD2Q5SZI1 272 aa12.84□□□□□ -0.35
SHMT2-231ENST00000557433 BOD1L2Q8IYS8 172 aa12.84□□□□□ -0.35
SHMT2-231ENST00000557433 OR4X2Q8NGF9 303 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms