RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	CEND1	Q8N111	149 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	IGFBPL1	Q8WX77	278 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	VKORC1	Q9BQB6	163 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	ZNF492	Q9P255	531 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005		K7EP13	123 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	AZU1	P20160	251 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	CD300E	Q496F6	205 aa	Predicted RBP	4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	SPACA3	Q8IXA5	215 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	RITA1	Q96K30	269 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	C21orf62	Q9NYP8	219 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	SRRM5	B3KS81	715 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	IL17REL	Q6ZVW7	336 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	NDUFA4L2	Q9NRX3	87 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	DKK2	Q9UBU2	259 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	ZNF256	Q9Y2P7	627 aa	Predicted RBP	4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	C17orf100	A8MU93	164 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	TIMM23	O14925	209 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	NPFF	O15130	113 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	MMP23A	O75900	390 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	SRD5A1	P18405	259 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	RHOG	P84095	191 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	ADIPOQ	Q15848	244 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	MRPL51	Q4U2R6	128 aa	Known RBP	4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	KLF17	Q5JT82	389 aa	Predicted RBP	4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	CCDC144NL	Q6NUI1	221 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	SIGLEC8	Q9NYZ4	499 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	IGHV1-8	P0DP01	117 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	ZNF474	Q6S9Z5	364 aa	Predicted RBP	4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	CENPV	Q7Z7K6	275 aa	Predicted RBP	4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	MDS2	Q8NDY4	140 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	C17orf77	Q96MU5	243 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	TRAV12-3	A0A0B4J271	114 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005		A0A1W2PPI3	338 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	FNDC10	F2Z333	226 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	CCL21	O00585	134 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	TAX1BP3	O14907	124 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	UBE2L6	O14933	153 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	NDUFB8	O95169	186 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	RNASE1	P07998	156 aa	Known RBP	4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	NDP	Q00604	133 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	C10orf126	Q8N4M7	172 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	TEX29	Q8N6K0	151 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	WIPF2	Q8TF74	440 aa	Predicted RBP	4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	CSTL1	Q9H114	145 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	PGPEP1	Q9NXJ5	209 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	SLC25A15	Q9Y619	301 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	SRRM4	A7MD48	611 aa	Known RBP	4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	SPINK8	P0C7L1	97 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	TMEM95	Q3KNT9	176 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	COA6	Q5JTJ3	125 aa	Known RBP	4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005		Q6ZSR3	168 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	VMO1	Q7Z5L0	202 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	TMEM167A	Q8TBQ9	72 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	C1RL	Q9NZP8	487 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	IGHV3OR16-12	A0A075B7B8	117 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	IGHV2-70D	A0A0C4DH43	119 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	ITGB1BP1	O14713	200 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	KLRB1	Q12918	225 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	FABP5P3	A8MUU1	101 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	TNFRSF6B	O95407	300 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	C11orf52	Q96A22	123 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	NXT2	Q9NPJ8	142 aa	Known RBP	4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	HEATR5B	Q9P2D3	2071 aa		4.01	□□□□□ -1.77
SYNE2-223	ENST00000557005	TRGV3	P03979	118 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	APOBEC3A	P31941	199 aa	Predicted RBP	4	□□□□□ -1.77
SYNE2-223	ENST00000557005	ZFAND6	Q6FIF0	208 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	SIGLEC15	Q6ZMC9	328 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	C11orf53	Q8IXP5	236 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	CYSLTR1	Q9Y271	337 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	IGHV3-73	A0A0B4J1V6	119 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	PRSS46	E5RG02	174 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	BUB1B-PAK6	H3BSN5	160 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	PF4V1	P10720	104 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	FAM57A	Q8TBR7	257 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	DUX5	Q96PT3	197 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	KIR2DL4	Q99706	377 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	PLSCR4	Q9NRQ2	329 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	TP53TG3	Q9ULZ0	132 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	RNF114	Q9Y508	228 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	NPIPB6	E9PJ23	425 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	TMEM178B	H3BS89	294 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	DKK1	O94907	266 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	NPY	P01303	97 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	FAM159A	Q6UWV7	190 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	ZNF562	Q6V9R5	426 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	RAX2	Q96IS3	184 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	SHANK2-AS3	Q9BTD1	123 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	PRSS2	P07478	247 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	FAM231D	Q6ZW35	169 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	SPATA12	Q7Z6I5	190 aa		4	□□□□□ -1.77
SYNE2-223	ENST00000557005	ARID1B	Q8NFD5	2236 aa	Predicted RBP	4	□□□□□ -1.77
SYNE2-223	ENST00000557005	BPTF	Q12830	3046 aa		3.99	□□□□□ -1.77
SYNE2-223	ENST00000557005	IGKV3OR2-268	A0A0C4DH90	116 aa		3.99	□□□□□ -1.77
SYNE2-223	ENST00000557005		A8MWV9	139 aa		3.99	□□□□□ -1.77
SYNE2-223	ENST00000557005		H7C1H1	209 aa		3.99	□□□□□ -1.77
SYNE2-223	ENST00000557005	PLN	P26678	52 aa		3.99	□□□□□ -1.77
SYNE2-223	ENST00000557005	PRR20E	P86478	221 aa		3.99	□□□□□ -1.77
SYNE2-223	ENST00000557005	PRR20C	P86479	221 aa		3.99	□□□□□ -1.77
SYNE2-223	ENST00000557005	PRR20D	P86480	221 aa		3.99	□□□□□ -1.77
SYNE2-223	ENST00000557005	PRR20B	P86481	221 aa		3.99	□□□□□ -1.77

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