RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 S100A7AQ86SG5 101 aa11.97□□□□□ -0.49
CUX1-215ENST00000556210 MRPL32Q9BYC8 188 aaKnown RBP11.97□□□□□ -0.49
CUX1-215ENST00000556210 MRPL36Q9P0J6 103 aaKnown RBP11.97□□□□□ -0.49
CUX1-215ENST00000556210 UFC1Q9Y3C8 167 aa11.97□□□□□ -0.49
CUX1-215ENST00000556210 TRAV9-2A0A087WT02 112 aa11.96□□□□□ -0.49
CUX1-215ENST00000556210 IGLC2P0DOY2 106 aa11.96□□□□□ -0.49
CUX1-215ENST00000556210 IGLC3P0DOY3 106 aa11.96□□□□□ -0.49
CUX1-215ENST00000556210 TSKUQ8WUA8 353 aa11.96□□□□□ -0.49
CUX1-215ENST00000556210 V9GYV3 84 aa11.96□□□□□ -0.49
CUX1-215ENST00000556210 FAM90A9PA6NNJ1 464 aa11.96□□□□□ -0.49
CUX1-215ENST00000556210 GPR183P32249 361 aa11.96□□□□□ -0.49
CUX1-215ENST00000556210 CFHR2P36980 270 aa11.96□□□□□ -0.49
CUX1-215ENST00000556210 SMIM15Q7Z3B0 74 aa11.96□□□□□ -0.49
CUX1-215ENST00000556210 A0A1W2PRE2 83 aa11.96□□□□□ -0.5
CUX1-215ENST00000556210 TSPOP30536 169 aa11.96□□□□□ -0.5
CUX1-215ENST00000556210 CHODLQ9H9P2 273 aa11.96□□□□□ -0.5
CUX1-215ENST00000556210 ZNF292O60281 2723 aa11.96□□□□□ -0.5
CUX1-215ENST00000556210 BMPR1BO00238 502 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 UQCRFS1P47985 274 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 MAJINQ3KP22 176 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 Q5PR19 223 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 IGFL3Q6UXB1 125 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 TMEM167AQ8TBQ9 72 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 NDUFA4L2Q9NRX3 87 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 SIGLEC9Q9Y336 463 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 GATA4P43694 442 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 KHDC1LQ5JSQ8 128 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 FBLN7Q53RD9 439 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 TMEM136Q6ZRR5 245 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 LAMA5O15230 3695 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 GPR82Q96P67 336 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 NDFIP1Q9BT67 221 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 C19orf24Q9BVV8 132 aa11.95□□□□□ -0.5
CUX1-215ENST00000556210 RELQ04864 619 aaPredicted RBP11.94□□□□□ -0.5
CUX1-215ENST00000556210 GAGE1Q13065 139 aa11.94□□□□□ -0.5
CUX1-215ENST00000556210 MRPL52Q86TS9 123 aaKnown RBP11.94□□□□□ -0.5
CUX1-215ENST00000556210 COL5A1P20908 1838 aaPredicted RBP11.94□□□□□ -0.5
CUX1-215ENST00000556210 GRAMD2BQ96HH9 432 aa11.94□□□□□ -0.5
CUX1-215ENST00000556210 VKORC1Q9BQB6 163 aa11.94□□□□□ -0.5
CUX1-215ENST00000556210 KMT2EQ8IZD2 1858 aa11.94□□□□□ -0.5
CUX1-215ENST00000556210 VWC2Q2TAL6 325 aa11.94□□□□□ -0.5
CUX1-215ENST00000556210 TMEM219Q86XT9 240 aa11.94□□□□□ -0.5
CUX1-215ENST00000556210 NUP37Q8NFH4 326 aa11.94□□□□□ -0.5
CUX1-215ENST00000556210 OR5AN1Q8NGI8 311 aa11.94□□□□□ -0.5
CUX1-215ENST00000556210 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.93□□□□□ -0.5
CUX1-215ENST00000556210 P0C879 139 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 FCER1GP30273 86 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 HBBP68871 147 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 FAM169BQ8N8A8 192 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 DDB2Q92466 427 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 LSM4Q9Y4Z0 139 aaKnown RBP11.93□□□□□ -0.5
CUX1-215ENST00000556210 BUB1B-PAK6H3BSN5 160 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 S100A4P26447 101 aaKnown RBP11.93□□□□□ -0.5
CUX1-215ENST00000556210 CA7P43166 264 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 GUSBP1Q15486 140 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 TWIST1Q15672 202 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 C12orf54Q6X4T0 127 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 LY96Q9Y6Y9 160 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 PRR20EP86478 221 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 PRR20CP86479 221 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 PRR20DP86480 221 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 PRR20BP86481 221 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 PRR20AP86496 221 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 SLAQ13239 276 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 SP5Q6BEB4 398 aaPredicted RBP11.93□□□□□ -0.5
CUX1-215ENST00000556210 NIT1Q86X76 327 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 DEFB104AQ8WTQ1 72 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 ZFHX4Q86UP3 3567 aa11.93□□□□□ -0.5
CUX1-215ENST00000556210 FAM181BA6NEQ2 426 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 HTN1P15515 57 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 MFAP4P55083 255 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 AARDQ4LEZ3 155 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 NUP35Q8NFH5 326 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 KALRNO60229 2985 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 TMEM155Q4W5P6 130 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 TEX45Q8NA69 505 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 Q8TAT8 98 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 C18orf32Q8TCD1 76 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 NBR2O15453 112 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 ZZEF1O43149 2961 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 MPV17L2Q567V2 206 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 LDLRAD2Q5SZI1 272 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 HSPB8Q9UJY1 196 aa11.92□□□□□ -0.5
CUX1-215ENST00000556210 UBE2V1Q13404 147 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 C17orf77Q96MU5 243 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 IGHV3-11P01762 117 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 ZNF841Q6ZN19 808 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 hDV102S1A0JD36 115 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 KLRB1Q12918 225 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 RNF125Q96EQ8 232 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 C18orf15Q96N68 181 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 SLC25A2Q9BXI2 301 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 C21orf62Q9NYP8 219 aa11.91□□□□□ -0.5
CUX1-215ENST00000556210 TMEM189A5PLL7 270 aa11.9□□□□□ -0.5
CUX1-215ENST00000556210 K7ERU9 68 aa11.9□□□□□ -0.5
CUX1-215ENST00000556210 CLEC19AQ6UXS0 136 aa11.9□□□□□ -0.5
CUX1-215ENST00000556210 ZNF833PQ6ZTB9 187 aa11.9□□□□□ -0.5
CUX1-215ENST00000556210 ARL6IP6Q8N6S5 226 aa11.9□□□□□ -0.5
CUX1-215ENST00000556210 SLC25A39Q9BZJ4 359 aaPredicted RBP11.9□□□□□ -0.5
CUX1-215ENST00000556210 RPP21Q9H633 154 aaKnown RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms