RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 IGHV3OR16-13A0A075B7E8 117 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 IGHV3-74A0A0B4J1X5 117 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 H2AFB1P0C5Y9 115 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 CCL20P78556 96 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 PEA15Q15121 130 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 ATP6V1FQ16864 119 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 RBPMS2Q6ZRY4 209 aaKnown RBP10.66□□□□□ -0.7
SHMT2-217ENST00000555116 GTSCR1Q86UQ5 136 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 THAP8Q8NA92 274 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 RNF2Q99496 336 aa10.66□□□□□ -0.7
SHMT2-217ENST00000555116 EIF5A2Q9GZV4 153 aaKnown RBP10.66□□□□□ -0.7
SHMT2-217ENST00000555116 IGKV1OR2-108A0A075B7D4 117 aa10.65□□□□□ -0.7
SHMT2-217ENST00000555116 A0A1B0GV50 99 aa10.65□□□□□ -0.7
SHMT2-217ENST00000555116 CD7P09564 240 aa10.65□□□□□ -0.7
SHMT2-217ENST00000555116 CRYBB3P26998 211 aa10.65□□□□□ -0.7
SHMT2-217ENST00000555116 CD81P60033 236 aa10.65□□□□□ -0.7
SHMT2-217ENST00000555116 FAM90A2PQ658T7 463 aa10.65□□□□□ -0.7
SHMT2-217ENST00000555116 LINC00518Q8N0U6 118 aa10.65□□□□□ -0.7
SHMT2-217ENST00000555116 PBDC1Q9BVG4 233 aa10.65□□□□□ -0.7
SHMT2-217ENST00000555116 UBE2L5PA0A1B0GUS4 154 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 ZFP92A6NM28 416 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 A8MZ25 164 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 RD3LP0DJH9 198 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 IGHV4-30-4P0DP06 118 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 PSG1P11464 419 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 NPPCP23582 126 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 SERF2P84101 59 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 ZNF90Q03938 601 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 OR10P1Q8NGE3 313 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 METTL26Q96S19 204 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 TRGV9Q99603 122 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 C19orf73Q9NVV2 129 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 U3KQE9 123 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 SNAPINO95295 136 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 PPT1P50897 306 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 USF2Q15853 346 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-217ENST00000555116 SFT2D1Q8WV19 159 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 SPAG8Q99932 426 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-217ENST00000555116 TMEM147Q9BVK8 224 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 RPRMQ9NS64 109 aa10.64□□□□□ -0.71
SHMT2-217ENST00000555116 IGHV3-66A0A0C4DH42 116 aa10.63□□□□□ -0.71
SHMT2-217ENST00000555116 FAM74A7A6NL05 159 aa10.63□□□□□ -0.71
SHMT2-217ENST00000555116 IL4P05112 153 aa10.63□□□□□ -0.71
SHMT2-217ENST00000555116 FRMD6-AS1P0C7T7 363 aa10.63□□□□□ -0.71
SHMT2-217ENST00000555116 BMI1P35226 326 aa10.63□□□□□ -0.71
SHMT2-217ENST00000555116 FAM74A3Q4VXF1 159 aa10.63□□□□□ -0.71
SHMT2-217ENST00000555116 TIMM9Q9Y5J7 89 aa10.63□□□□□ -0.71
SHMT2-217ENST00000555116 DNAH9Q9NYC9 4486 aa10.62□□□□□ -0.71
SHMT2-217ENST00000555116 TRAV1-1A0A0B4J248 108 aa10.62□□□□□ -0.71
SHMT2-217ENST00000555116 DLK1P80370 383 aa10.62□□□□□ -0.71
SHMT2-217ENST00000555116 VWC2Q2TAL6 325 aa10.62□□□□□ -0.71
SHMT2-217ENST00000555116 TCF24Q7RTU0 167 aa10.62□□□□□ -0.71
SHMT2-217ENST00000555116 OR51G1Q8NGK1 321 aa10.62□□□□□ -0.71
SHMT2-217ENST00000555116 RARRES2Q99969 163 aa10.62□□□□□ -0.71
SHMT2-217ENST00000555116 WFDC10AQ9H1F0 79 aa10.62□□□□□ -0.71
SHMT2-217ENST00000555116 SAV1Q9H4B6 383 aaPredicted RBP10.62□□□□□ -0.71
SHMT2-217ENST00000555116 SMDT1Q9H4I9 107 aa10.62□□□□□ -0.71
SHMT2-217ENST00000555116 A0A1W2PS18 150 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 RBFOX3A6NFN3 312 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 HBE1P02100 147 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 TMEM144Q7Z5S9 345 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 RNF125Q96EQ8 232 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 SLC35B3Q9H1N7 401 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 COL7A1Q02388 2944 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 FNDC10F2Z333 226 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 FABP1P07148 127 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 RAB2AP61019 212 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 ZNF726P1Q15940 193 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 TMEM41BQ5BJD5 291 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 DEFB125Q8N687 156 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 MBD3L1Q8WWY6 194 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 ASCL2Q99929 193 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 BIN3Q9NQY0 253 aa10.61□□□□□ -0.71
SHMT2-217ENST00000555116 OR11H12B2RN74 326 aa10.6□□□□□ -0.71
SHMT2-217ENST00000555116 FGF7P21781 194 aa10.6□□□□□ -0.71
SHMT2-217ENST00000555116 RABAC1Q9UI14 185 aa10.6□□□□□ -0.71
SHMT2-217ENST00000555116 SMCO3A2RU48 225 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 OR4C46A6NHA9 309 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 HAGHQ16775 308 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 TMEM88Q6PEY1 159 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 C16orf54Q6UWD8 224 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 SSX7Q7RTT5 188 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 SBSPONQ8IVN8 264 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 GLMPQ8WWB7 406 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 GGACTQ9BVM4 153 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 TUBA4BQ9H853 241 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 IGKV3-7A0A075B6H7 116 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 LYZP61626 148 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 ODF3L2Q3SX64 289 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 ZNF506Q5JVG8 444 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 LINC00322Q6ZN03 302 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-217ENST00000555116 GBGT1Q8N5D6 347 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 STPG3Q8N7X2 389 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 GRAMD2BQ96HH9 432 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 NPCDR1Q9BY65 106 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 NPVFQ9HCQ7 196 aa10.59□□□□□ -0.71
SHMT2-217ENST00000555116 RBMY1BA6NDE4 496 aaKnown RBP10.58□□□□□ -0.72
SHMT2-217ENST00000555116 RBMY1EA6NEQ0 496 aaKnown RBP10.58□□□□□ -0.72
SHMT2-217ENST00000555116 BUB3O43684 328 aa10.58□□□□□ -0.72
SHMT2-217ENST00000555116 RBMY1DP0C7P1 496 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms