RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 TAF9Q16594 264 aa2.54□□□□□ -2
SCFD1-211ENST00000554437 PABPC1L2AQ5JQF8 200 aa2.54□□□□□ -2
SCFD1-211ENST00000554437 C7orf65Q6ZTY9 151 aa2.54□□□□□ -2
SCFD1-211ENST00000554437 SLC35E3Q7Z769 313 aa2.54□□□□□ -2
SCFD1-211ENST00000554437 AQP3Q92482 292 aa2.54□□□□□ -2
SCFD1-211ENST00000554437 MCEEQ96PE7 176 aa2.54□□□□□ -2
SCFD1-211ENST00000554437 NHP2Q9NX24 153 aaKnown RBP2.54□□□□□ -2
SCFD1-211ENST00000554437 NUP205Q92621 2012 aa2.54□□□□□ -2
SCFD1-211ENST00000554437 RIMS1Q86UR5 1692 aaKnown RBP2.53□□□□□ -2
SCFD1-211ENST00000554437 RIC1Q4ADV7 1423 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 CCNB3Q8WWL7 1395 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 PLXND1Q9Y4D7 1925 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 OR2T8A6NH00 312 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 A8MWV9 139 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 PSCAO43653 123 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 SYNGR2O43760 224 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 TCRAP04437 139 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 ZNF705BP0CI00 300 aaPredicted RBP2.53□□□□□ -2
SCFD1-211ENST00000554437 SMIM6P0DI80 62 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 CRYGAP11844 174 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 DEFA4P12838 97 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 FUSP35637 526 aaKnown RBP eCLIP2.53□□□□□ -2
SCFD1-211ENST00000554437 FOXA3P55318 350 aaPredicted RBP2.53□□□□□ -2
SCFD1-211ENST00000554437 MRPS10P82664 201 aaKnown RBP2.53□□□□□ -2
SCFD1-211ENST00000554437 QRFPP83859 136 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 OCIAD2Q56VL3 154 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 RNASE10Q5GAN6 216 aaKnown RBP2.53□□□□□ -2
SCFD1-211ENST00000554437 FAM27BQ5VT28 67 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 MORN4Q8NDC4 146 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 OR4B1Q8NGF8 309 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 PDCD10Q9BUL8 212 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 HIGD2AQ9BW72 106 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 BCL2L10Q9HD36 194 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 HHLA3Q9XRX5 114 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 HSPE1-MOB4S4R3N1 261 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 ECM29Q5VYK3 1845 aa2.53□□□□□ -2
SCFD1-211ENST00000554437 TRPM3Q9HCF6 1732 aaPredicted RBP2.53□□□□□ -2
SCFD1-211ENST00000554437 FAM135AQ9P2D6 1515 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 C9orf170A2RU37 121 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 ZNF727A8MUV8 499 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 F6UZH7 168 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 UQCRQO14949 82 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 TIMM17BO60830 172 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 CSRP1P21291 193 aaKnown RBP2.52□□□□□ -2.01
SCFD1-211ENST00000554437 AKR1D1P51857 326 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 KLRD1Q13241 179 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 TMEM155Q4W5P6 130 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 LCN15Q6UWW0 184 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 PATE2Q6UY27 113 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 WFDC11Q8NEX6 87 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 ZNF418Q8TF45 676 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-211ENST00000554437 DIRC1Q969H9 104 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 MRPS24Q96EL2 167 aaKnown RBP2.52□□□□□ -2.01
SCFD1-211ENST00000554437 TAF9BQ9HBM6 251 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 NIT2Q9NQR4 276 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 R4GN34 69 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 ATG2BQ96BY7 2078 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 RIMBP3CA6NJZ7 1639 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 RIMBP3BA6NNM3 1639 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 RIMBP3Q9UFD9 1639 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 MYH10P35580 1976 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 DENND4CQ5VZ89 1909 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 UHRF1BP1LA0JNW5 1464 aa2.52□□□□□ -2.01
SCFD1-211ENST00000554437 UBR2Q8IWV8 1755 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 IGLV3-9A0A075B6K5 115 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 TRAV27A0A087WT01 109 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 IGHV1-18A0A0C4DH31 117 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 A0A0J9YX75 114 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 ZNF670-ZNF695F2Z2N8 137 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 CPSF4O95639 269 aaKnown RBP2.51□□□□□ -2.01
SCFD1-211ENST00000554437 SLC25A5P05141 298 aaKnown RBP2.51□□□□□ -2.01
SCFD1-211ENST00000554437 METTL15P1P0C7V9 234 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 GUCA1AP43080 201 aaPredicted RBP2.51□□□□□ -2.01
SCFD1-211ENST00000554437 MAXP61244 160 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 LSM3P62310 102 aaKnown RBP2.51□□□□□ -2.01
SCFD1-211ENST00000554437 RELAQ04206 551 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 DIAPH2-AS1Q14236 149 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 GLIPR1L1Q6UWM5 242 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 AAED1Q7RTV5 226 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 FAM216BQ8N7L0 139 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 LINC00304Q8N9R0 145 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 C14orf144Q96I85 54 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 LINC00467Q9BRT7 94 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 NUP210Q8TEM1 1887 aaPredicted RBP2.51□□□□□ -2.01
SCFD1-211ENST00000554437 TCOF1Q13428 1488 aaKnown RBP2.51□□□□□ -2.01
SCFD1-211ENST00000554437 MRC2Q9UBG0 1479 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 FGD6Q6ZV73 1430 aa2.51□□□□□ -2.01
SCFD1-211ENST00000554437 EIF4G3O43432 1585 aaKnown RBP2.5□□□□□ -2.01
SCFD1-211ENST00000554437 IGHV3-64A0A075B6Q5 118 aa2.5□□□□□ -2.01
SCFD1-211ENST00000554437 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.5□□□□□ -2.01
SCFD1-211ENST00000554437 HLA-DRB4P13762 266 aa2.5□□□□□ -2.01
SCFD1-211ENST00000554437 MRPS36P82909 103 aaKnown RBP2.5□□□□□ -2.01
SCFD1-211ENST00000554437 TCTEX1D1Q8N7M0 179 aa2.5□□□□□ -2.01
SCFD1-211ENST00000554437 OR10AC1Q8NH08 325 aa2.5□□□□□ -2.01
SCFD1-211ENST00000554437 CHCHD1Q96BP2 118 aaKnown RBP2.5□□□□□ -2.01
SCFD1-211ENST00000554437 TMEM191AQ9H0A3 160 aa2.5□□□□□ -2.01
SCFD1-211ENST00000554437 SOX21Q9Y651 276 aaPredicted RBP2.5□□□□□ -2.01
SCFD1-211ENST00000554437 HLA-DRB4X5D2U9 266 aa2.5□□□□□ -2.01
SCFD1-211ENST00000554437 DOCK4Q8N1I0 1966 aa2.5□□□□□ -2.01
SCFD1-211ENST00000554437 PIK3C2AO00443 1686 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms