RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 SDIM1Q6ZPB5 146 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 FOXI2Q6ZQN5 318 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 PFN4Q8NHR9 129 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 SMCR5Q8TEV8 140 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 IMMP1LQ96LU5 166 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 ZNF407Q9C0G0 2248 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 TOPBP1Q92547 1522 aa4.15□□□□□ -1.75
VPS29-210ENST00000552130 NSD3Q9BZ95 1437 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 ARID1AO14497 2285 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 TRBV20-1A0A075B6N2 111 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 IGHV3-73A0A0B4J1V6 119 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 A0A0B4J2C4 111 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 A0A0D9SG52 128 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 GEMIN2O14893 280 aaKnown RBP4.14□□□□□ -1.75
VPS29-210ENST00000552130 LHBP01229 141 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 IFITM1P13164 125 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 IGLV3-21P80748 117 aaPredicted RBP4.14□□□□□ -1.75
VPS29-210ENST00000552130 ZNF90Q03938 601 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 UBE2SQ16763 222 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 C15orf32Q32M92 178 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 PATE2Q6UY27 113 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 SEC11CQ9BY50 192 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 AGPAT4-IT1Q9H0P7 198 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 SLC35B3Q9H1N7 401 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 LSM2Q9Y333 95 aaKnown RBP4.14□□□□□ -1.75
VPS29-210ENST00000552130 DLC1Q96QB1 1528 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 COL18A1P39060 1754 aa4.14□□□□□ -1.75
VPS29-210ENST00000552130 PIK3C2AO00443 1686 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 MYH6P13533 1939 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 TP53BP1Q12888 1972 aaPredicted RBP4.13□□□□□ -1.75
VPS29-210ENST00000552130 MDFIC2A0A1B0GVS7 189 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 TCL1BO95988 128 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 GZMBP10144 247 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 RPS10P46783 165 aaKnown RBP4.13□□□□□ -1.75
VPS29-210ENST00000552130 DYNLT1P63172 113 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 ZNF660Q6AZW8 331 aaPredicted RBP4.13□□□□□ -1.75
VPS29-210ENST00000552130 SVBPQ8N300 66 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 LINC00471Q8N535 108 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 FAM216BQ8N7L0 139 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 SMDT1Q9H4I9 107 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 SAR1AQ9NR31 198 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 ZNF443Q9Y2A4 671 aaPredicted RBP4.13□□□□□ -1.75
VPS29-210ENST00000552130 CHCHD2Q9Y6H1 151 aaPredicted RBP4.13□□□□□ -1.75
VPS29-210ENST00000552130 KTN1Q86UP2 1357 aaKnown RBP4.13□□□□□ -1.75
VPS29-210ENST00000552130 CUL7Q14999 1698 aa4.13□□□□□ -1.75
VPS29-210ENST00000552130 PTPRTO14522 1441 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 TROQ12816 1431 aaPredicted RBP4.12□□□□□ -1.75
VPS29-210ENST00000552130 RPRD2Q5VT52 1461 aaKnown RBP4.12□□□□□ -1.75
VPS29-210ENST00000552130 ARHGAP35Q9NRY4 1499 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 IGKV1OR2-108A0A075B7D4 117 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 A8MUU9 505 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 H3BQF6 201 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 H3BT86 120 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 OR1I1O60431 355 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 TPT1P13693 172 aaKnown RBP4.12□□□□□ -1.75
VPS29-210ENST00000552130 KLRD1Q13241 179 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 CDK5R1Q15078 307 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 C2orf83Q53S99 150 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 Q56UQ5 140 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 KHDC3LQ587J8 217 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 LYZL2Q7Z4W2 148 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 C10orf111Q8N326 155 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 SPANXA2-OT1Q8N9U9 137 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 IMMP2LQ96T52 175 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 PKMYT1Q99640 499 aa4.12□□□□□ -1.75
VPS29-210ENST00000552130 ADGRL2O95490 1459 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 MAPKBP1O60336 1514 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 ANAPC1Q9H1A4 1944 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 NOTCH3Q9UM47 2321 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 IGLV3-9A0A075B6K5 115 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 PINLYPA6NC86 204 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 PMP2P02689 132 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 ZNF19P17023 458 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 MPV17P39210 176 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 CRIP2P52943 208 aaPredicted RBP4.11□□□□□ -1.75
VPS29-210ENST00000552130 KRTAP10-12P60413 245 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 UBA52P62987 128 aaKnown RBP4.11□□□□□ -1.75
VPS29-210ENST00000552130 SUPT4H1P63272 117 aaKnown RBP4.11□□□□□ -1.75
VPS29-210ENST00000552130 MRPS36P82909 103 aaKnown RBP4.11□□□□□ -1.75
VPS29-210ENST00000552130 C9orf153Q5TBE3 101 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 DPPA3Q6W0C5 159 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 Q6ZUT4 128 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 C2orf91Q6ZV80 131 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 FKBP11Q9NYL4 201 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 HSPE1-MOB4S4R3N1 261 aa4.11□□□□□ -1.75
VPS29-210ENST00000552130 NUP214P35658 2090 aaPredicted RBP4.1□□□□□ -1.75
VPS29-210ENST00000552130 IGHV3-15A0A0B4J1V0 119 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 A0A1W2PQD3 144 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 CTSDP07339 412 aaPredicted RBP4.1□□□□□ -1.75
VPS29-210ENST00000552130 MSMBP08118 114 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 XCL1P47992 114 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 FOXA1P55317 472 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 BLCAPP62952 87 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 EBI3Q14213 229 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 PYY3Q5JQD4 70 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 SLC35E3Q7Z769 313 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 MUC7Q8TAX7 377 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 LINC00526Q96FQ7 95 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 PRO1933Q9H354 126 aa4.1□□□□□ -1.75
VPS29-210ENST00000552130 NOP16Q9Y3C1 178 aaKnown RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms