RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 RAB3CQ96E17 227 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 FAM210BQ96KR6 192 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 HSD17B10Q99714 261 aaKnown RBP2.49□□□□□ -2.01
LIMA1-206ENST00000550611 GINS4Q9BRT9 223 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 ATG101Q9BSB4 218 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 ALKBH7Q9BT30 221 aaPredicted RBP2.49□□□□□ -2.01
LIMA1-206ENST00000550611 NDUFAF3Q9BU61 184 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 C20orf24Q9BUV8 137 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 TPPP3Q9BW30 176 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 MRPS26Q9BYN8 205 aaKnown RBP2.49□□□□□ -2.01
LIMA1-206ENST00000550611 NDUFA4L2Q9NRX3 87 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 SMPD3Q9NY59 655 aaPredicted RBP2.49□□□□□ -2.01
LIMA1-206ENST00000550611 C21orf62Q9NYP8 219 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 THYN1Q9P016 225 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 ELF5Q9UKW6 265 aaPredicted RBP2.49□□□□□ -2.01
LIMA1-206ENST00000550611 RAB22AQ9UL26 194 aa2.49□□□□□ -2.01
LIMA1-206ENST00000550611 LSM2Q9Y333 95 aaKnown RBP2.49□□□□□ -2.01
LIMA1-206ENST00000550611 AK6Q9Y3D8 172 aaKnown RBP2.49□□□□□ -2.01
LIMA1-206ENST00000550611 RBM7Q9Y580 266 aaKnown RBP2.49□□□□□ -2.01
LIMA1-206ENST00000550611 F11RQ9Y624 299 aaKnown RBP2.49□□□□□ -2.01
LIMA1-206ENST00000550611 TRAV14DV4A0A0A6YYC5 116 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 TEX50A0A1B0GTY4 177 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 I3L2K1 104 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 J3QRK9 145 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 K7EQG2 157 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 IFNA10P01566 189 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 IFNA21P01568 189 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 IFNA17P01571 189 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 CD5P06127 495 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 CTXN2P0C2S0 81 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 SMIM6P0DI80 62 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 TRAPPC2P0DI81 140 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 TRAPPC2BP0DI82 140 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 OR13C7P0DN81 318 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 GNB3P16520 340 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 CD36P16671 472 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 C4BPBP20851 252 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 NFYAP23511 347 aaPredicted RBP2.48□□□□□ -2.01
LIMA1-206ENST00000550611 DTYMKP23919 212 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 CRHBPP24387 322 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 ASIPP42127 132 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 TAS2R31P59538 309 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 ZNF846Q147U1 533 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 RAB11BQ15907 218 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 HACD4Q5VWC8 232 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 LEMD1Q68G75 181 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 SIGLEC15Q6ZMC9 328 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 TCF24Q7RTU0 167 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 HSD17B13Q7Z5P4 300 aaPredicted RBP2.48□□□□□ -2.01
LIMA1-206ENST00000550611 DUSP18Q8NEJ0 188 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 OR10R2Q8NGX6 335 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 TCTEX1D2Q8WW35 142 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 CYGBQ8WWM9 190 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 PRAC1Q96KF2 57 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 PFDN5Q99471 154 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 NXF2Q9GZY0 626 aaKnown RBP2.48□□□□□ -2.01
LIMA1-206ENST00000550611 DCSTAMPQ9H295 470 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 MS4A6AQ9H2W1 248 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 TBC1D24Q9ULP9 559 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 KCNIP3Q9Y2W7 256 aa2.48□□□□□ -2.01
LIMA1-206ENST00000550611 PUS1Q9Y606 427 aaKnown RBP eCLIP2.48□□□□□ -2.01
LIMA1-206ENST00000550611 IGKV3-7A0A075B6H7 116 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 IGHV3OR16-13A0A075B7E8 117 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 IGHV3-49A0A0A0MS15 119 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 IGHV3-21A0A0B4J1V1 117 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 IGHV3-74A0A0B4J1X5 117 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 KNCNA6PVL3 124 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 ZNF705FA8MVS1 300 aaPredicted RBP2.47□□□□□ -2.01
LIMA1-206ENST00000550611 ZNF701M0R085 212 aaPredicted RBP2.47□□□□□ -2.01
LIMA1-206ENST00000550611 MYL12BO14950 172 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 RGS5O15539 181 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 CYB5BO43169 146 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 HPRT1P00492 218 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 LINC00614P0C842 121 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 ZNF705DP0CH99 300 aaPredicted RBP2.47□□□□□ -2.01
LIMA1-206ENST00000550611 ZNF705BP0CI00 300 aaPredicted RBP2.47□□□□□ -2.01
LIMA1-206ENST00000550611 NQO2P16083 231 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 NPY1RP25929 384 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 XGP55808 180 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 PAFAH1B2P68402 229 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 IFITM2Q01629 132 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 SLAQ13239 276 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 OXA1LQ15070 435 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 SPHARQ15513 63 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 ZNF876PQ49A33 203 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 ZFP69Q49AA0 526 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 CDNFQ49AH0 187 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 UBE2UQ5VVX9 321 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 CNIH2Q6PI25 160 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 TOMM20LQ6UXN7 152 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 ZNF705AQ6ZN79 300 aaPredicted RBP2.47□□□□□ -2.01
LIMA1-206ENST00000550611 HOGA1Q86XE5 327 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 STHQ8IWL8 128 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 LYPD1Q8N2G4 141 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 ZNF555Q8NEP9 628 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 OR2D3Q8NGH3 330 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 OR1L8Q8NGR8 309 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 OR1P1Q8NH06 330 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 STOML3Q8TAV4 291 aa2.47□□□□□ -2.01
LIMA1-206ENST00000550611 DCANP1Q8TF63 244 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms