RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 BMPR1BO00238 502 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 ATP6V0E1O15342 81 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF253O75346 499 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 FSHBP01225 129 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 RPL7P18124 248 aaKnown RBP4.84□□□□□ -1.63
SYNE1-239ENST00000545694 NPPCP23582 126 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 MYCNOSP40205 109 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 AKR1C3P42330 323 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 RPL35P42766 123 aaKnown RBP4.84□□□□□ -1.63
SYNE1-239ENST00000545694 GNG4P50150 75 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 LYZP61626 148 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 RELQ04864 619 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-239ENST00000545694 FOXL1Q12952 345 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 ELOBQ15370 118 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 COX19Q49B96 90 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 Q56UQ5 140 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 C19orf54Q5BKX5 351 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 FAM120AOSQ5T036 256 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 C1orf194Q5T5A4 169 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 CYB5R2Q6BCY4 276 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF491Q8N8L2 437 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 C5orf17Q8NAS9 161 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF502Q8TBZ5 544 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 ISOC2Q96AB3 205 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 YPEL4Q96NS1 127 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 PYGO2Q9BRQ0 406 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 FAM103A1Q9BTL3 118 aaKnown RBP4.84□□□□□ -1.63
SYNE1-239ENST00000545694 PRDM13Q9H4Q3 707 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 OTORQ9NRC9 128 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 CLEC5AQ9NY25 188 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 ZANQ9Y493 2812 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 ITPR3Q14573 2671 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 A0A0U1RQK1 487 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 GGTLC3B5MD39 225 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 OR2J3O76001 311 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 TGFAP01135 160 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 TYMSP04818 313 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 IL4P05112 153 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 CRYBA1P05813 215 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 CTSGP08311 255 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 APELAP0DMC3 54 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 IGHV4-38-2P0DP08 117 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 GP9P14770 177 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 SUMO1P63165 101 aaKnown RBP4.83□□□□□ -1.64
SYNE1-239ENST00000545694 RHOGP84095 191 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 PSG9Q00887 426 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 ATP5G2Q06055 141 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 SCGB2A2Q13296 93 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 TMEM183BQ1AE95 376 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 C15orf32Q32M92 178 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 KLF17Q5JT82 389 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-239ENST00000545694 Q5PR19 223 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 RUSC1-AS1Q66K80 236 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 ZNF329Q86UD4 541 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 FAM24BQ8N5W8 94 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 OR5T1Q8NG75 326 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 OR10G8Q8NGN5 311 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 SFRP2Q96HF1 295 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 FMC1Q96HJ9 113 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 C8orf49Q96NF6 230 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 HSPB9Q9BQS6 159 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 ATG101Q9BSB4 218 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 OSTCQ9NRP0 149 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 RABAC1Q9UI14 185 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 EPDR1Q9UM22 224 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 KLF12Q9Y4X4 402 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 TENM4Q6N022 2769 aa4.83□□□□□ -1.64
SYNE1-239ENST00000545694 ITPR2Q14571 2701 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 UNC79Q9P2D8 2635 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 ZNF98A6NK75 572 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 H3BUX3 64 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 PEX7O00628 323 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 ISLRO14498 428 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 GGCTO75223 188 aaKnown RBP4.82□□□□□ -1.64
SYNE1-239ENST00000545694 GCGP01275 180 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 IGHV3-48P01763 117 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 AMY1AP04745 511 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 PFN1P07737 140 aaKnown RBP4.82□□□□□ -1.64
SYNE1-239ENST00000545694 IGHV4-31P0DP07 118 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 CRYBB3P26998 211 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 GALR1P47211 349 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 FAM3BP58499 235 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-239ENST00000545694 UBE2G1P62253 170 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 ECSCRQ19T08 205 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 TEX38Q6PEX7 206 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 BRD3OSQ6XYD6 125 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 FAM231DQ6ZW35 169 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 TMEM86BQ8N661 226 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 OCC1Q8TAD7 63 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 CMTM2Q8TAZ6 248 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 FAM210BQ96KR6 192 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 ELOVL1Q9BW60 279 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 KRTAP3-1Q9BYR8 98 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 AAMDCQ9H7C9 122 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 SRD5A3Q9H8P0 318 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 FBN2P35556 2912 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 MXRA5Q9NR99 2828 aa4.82□□□□□ -1.64
SYNE1-239ENST00000545694 FLNAP21333 2647 aaKnown RBP4.81□□□□□ -1.64
SYNE1-239ENST00000545694 TRBV20OR9-2A0A075B6H5 130 aa4.81□□□□□ -1.64
SYNE1-239ENST00000545694 TRBV19A0A075B6N1 114 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms