RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 MED28Q9H204 178 aa10.68□□□□□ -0.7
CLSTN3-216ENST00000545663 Q9H3A6 140 aa10.68□□□□□ -0.7
CLSTN3-216ENST00000545663 GSKIPQ9P0R6 139 aa10.68□□□□□ -0.7
CLSTN3-216ENST00000545663 YTHDF2Q9Y5A9 579 aaKnown RBP10.68□□□□□ -0.7
CLSTN3-216ENST00000545663 ALG5Q9Y673 324 aa10.68□□□□□ -0.7
CLSTN3-216ENST00000545663 TEX48A0A1B0GUV7 120 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 SMIM9A6NGZ8 99 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 SCGB2A1O75556 95 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 PET100P0DJ07 73 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 TAS2R30P59541 319 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 RAB11AP62491 216 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 C2orf83Q53S99 150 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 Q6ZRN7 208 aaPredicted RBP10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 SLC24A4Q8NFF2 622 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 RNASEH2CQ8TDP1 164 aaKnown RBP10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 NMES1Q9C002 83 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 RBKSQ9H477 322 aa10.67□□□□□ -0.7
CLSTN3-216ENST00000545663 GOSR2O14653 212 aa10.66□□□□□ -0.7
CLSTN3-216ENST00000545663 IFNA5P01569 189 aa10.66□□□□□ -0.7
CLSTN3-216ENST00000545663 RLN2P04090 185 aa10.66□□□□□ -0.7
CLSTN3-216ENST00000545663 USF2Q15853 346 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-216ENST00000545663 BSXQ3C1V8 233 aa10.66□□□□□ -0.7
CLSTN3-216ENST00000545663 TTC32Q5I0X7 151 aa10.66□□□□□ -0.7
CLSTN3-216ENST00000545663 ETFRF1Q6IPR1 90 aa10.66□□□□□ -0.7
CLSTN3-216ENST00000545663 UHRF2Q96PU4 802 aa10.66□□□□□ -0.7
CLSTN3-216ENST00000545663 ZNF586Q9NXT0 402 aa10.66□□□□□ -0.7
CLSTN3-216ENST00000545663 H3BMM0 161 aa10.65□□□□□ -0.7
CLSTN3-216ENST00000545663 NUTF2P61970 127 aaKnown RBP10.65□□□□□ -0.7
CLSTN3-216ENST00000545663 CDPF1Q6NVV7 123 aa10.65□□□□□ -0.7
CLSTN3-216ENST00000545663 SMIM8Q96KF7 97 aa10.65□□□□□ -0.7
CLSTN3-216ENST00000545663 TXN2Q99757 166 aa10.65□□□□□ -0.7
CLSTN3-216ENST00000545663 GINS3Q9BRX5 216 aa10.65□□□□□ -0.7
CLSTN3-216ENST00000545663 MGAT4CQ9UBM8 478 aa10.65□□□□□ -0.7
CLSTN3-216ENST00000545663 LOC102723971A0A1B0GUV8 181 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 L7N2F9 121 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 CCSO14618 274 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 TSC22D2O75157 780 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 SCGB1D2O95969 90 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 IGKV3-20P01619 116 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 RNASE2P10153 161 aaKnown RBP10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 LINC00315P59091 139 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 VAMP2P63027 116 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 SPINK9Q5DT21 86 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 ZFAND3Q9H8U3 227 aa10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 STRAPQ9Y3F4 350 aaKnown RBP10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 PUS1Q9Y606 427 aaKnown RBP eCLIP10.64□□□□□ -0.71
CLSTN3-216ENST00000545663 F5H768 121 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 I3L2K1 104 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 MBPP02686 304 aaPredicted RBP10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 DNAH10OSP0CZ25 163 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 SLC25A4P12235 298 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 NPBWR1P48145 328 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 MFAP4P55083 255 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 DEFB1P60022 68 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 RRAS2P62070 204 aaPredicted RBP10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 POLR2GP62487 172 aaKnown RBP eCLIP10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 FGL1Q08830 312 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 CLINT1Q14677 625 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 RNF141Q8WVD5 230 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 MISP3Q96FF7 219 aa10.63□□□□□ -0.71
CLSTN3-216ENST00000545663 HELTA6NFD8 242 aa10.62□□□□□ -0.71
CLSTN3-216ENST00000545663 SSSCA1O60232 199 aa10.62□□□□□ -0.71
CLSTN3-216ENST00000545663 NXPH3O95157 252 aa10.62□□□□□ -0.71
CLSTN3-216ENST00000545663 GPX4P36969 197 aaPredicted RBP10.62□□□□□ -0.71
CLSTN3-216ENST00000545663 IL15RAQ13261 267 aa10.62□□□□□ -0.71
CLSTN3-216ENST00000545663 MAGT1Q9H0U3 335 aa10.62□□□□□ -0.71
CLSTN3-216ENST00000545663 PSENENQ9NZ42 101 aa10.62□□□□□ -0.71
CLSTN3-216ENST00000545663 TRAV30A0A087WSZ9 112 aa10.61□□□□□ -0.71
CLSTN3-216ENST00000545663 K7EPK0 472 aa10.61□□□□□ -0.71
CLSTN3-216ENST00000545663 PRM2P04554 102 aa10.61□□□□□ -0.71
CLSTN3-216ENST00000545663 IAPPP10997 89 aa10.61□□□□□ -0.71
CLSTN3-216ENST00000545663 OPRK1P41145 380 aa10.61□□□□□ -0.71
CLSTN3-216ENST00000545663 P2RY1P47900 373 aa10.61□□□□□ -0.71
CLSTN3-216ENST00000545663 S100A10P60903 97 aa10.61□□□□□ -0.71
CLSTN3-216ENST00000545663 LSM5Q9Y4Y9 91 aaKnown RBP10.61□□□□□ -0.71
CLSTN3-216ENST00000545663 TNFRSF18Q9Y5U5 241 aa10.61□□□□□ -0.71
CLSTN3-216ENST00000545663 A0A1W2PPQ1 181 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 E5RGE8 158 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 EREGO14944 169 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 GNG7O60262 68 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 MT-CO2P00403 227 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 GIPP09681 153 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 DEFB130BP0DP73 79 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 DEFB130AP0DP74 79 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 GCSHP23434 173 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 NPPCP23582 126 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 H2BFSP57053 126 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 RAP2BP61225 183 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 RAB32Q13637 225 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 SPANXN5Q5MJ07 72 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 GDF5OSQ5U4N7 250 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 C1orf158Q8N1D5 194 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 DEFB104AQ8WTQ1 72 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 PPP1R1CQ8WVI7 109 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 PINX1Q96BK5 328 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 TMEM231Q9H6L2 316 aa10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 RCL1Q9Y2P8 373 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-216ENST00000545663 SIX6O95475 246 aa10.59□□□□□ -0.71
CLSTN3-216ENST00000545663 ERVFC1-1P60608 527 aa10.59□□□□□ -0.71
CLSTN3-216ENST00000545663 FCN2Q15485 313 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms