RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 NDUFB8O95169 186 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 CIARTQ8N365 385 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-213ENST00000540338 IGFBPL1Q8WX77 278 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 SSBP4Q9BWG4 385 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-213ENST00000540338 CGB1A6NKQ9 187 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 COX6B1P14854 86 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 FOXA3P55318 350 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-213ENST00000540338 PLP1P60201 277 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 KCNS1Q96KK3 526 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 TRAV40A0A0B4J280 105 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 CRYGBP07316 175 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 GZMBP10144 247 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 HOXB4P17483 251 aaPredicted RBP8.54□□□□□ -1.04
CLIP1-213ENST00000540338 RPS20P60866 119 aaKnown RBP8.54□□□□□ -1.04
CLIP1-213ENST00000540338 A0A1B0GUS0 222 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 SMIM27A0A1W2PRY6 76 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 FBLL1A6NHQ2 334 aaKnown RBP8.54□□□□□ -1.04
CLIP1-213ENST00000540338 K7EIM0 57 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 FCN3O75636 299 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 IGKV1-17P01599 117 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 CDSNQ15517 529 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 TMEM78Q5T7P6 136 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 ITLN2Q8WWU7 325 aaPredicted RBP8.54□□□□□ -1.04
CLIP1-213ENST00000540338 FRYLO94915 3013 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 TRBV19A0A075B6N1 114 aa8.54□□□□□ -1.04
CLIP1-213ENST00000540338 IGHV3-49A0A0A0MS15 119 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 IGHV3-66A0A0C4DH42 116 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 Q0VG73 95 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 TMEM136Q6ZRR5 245 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 REC114Q7Z4M0 266 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 Q86TA4 180 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 ZNF491Q8N8L2 437 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 C16orf92Q96LL3 132 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 MOB4Q9Y3A3 225 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 H3BRN7 92 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 M0R143 59 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 Q6AWC8 147 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 TMEM219Q86XT9 240 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 TTC9CQ8N5M4 171 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 NRN1Q9NPD7 142 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 SPG11Q96JI7 2443 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 WDFY4Q6ZS81 3184 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 TMEM8BA6NDV4 472 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 ZNF207O43670 478 aaKnown RBP8.53□□□□□ -1.04
CLIP1-213ENST00000540338 ZFP36P26651 326 aaKnown RBP8.53□□□□□ -1.04
CLIP1-213ENST00000540338 FAM19A2Q8N3H0 131 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.53□□□□□ -1.046e-7■■■■■ 33
CLIP1-213ENST00000540338 LY6LH3BQJ8 138 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 M0R3E3 92 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 NDUFA3O95167 84 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 GP9P14770 177 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 PDE6HQ13956 83 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 C11orf71Q6IPW1 123 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 FAM110DQ8TAY7 271 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-213ENST00000540338 IGF2BP2-AS1Q96M15 143 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 ZNF492Q9P255 531 aa8.53□□□□□ -1.04
CLIP1-213ENST00000540338 IFITM10A6NMD0 228 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 ZNF324O75467 553 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-213ENST00000540338 PRB4P10163 310 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-213ENST00000540338 BRD3OSQ6XYD6 125 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 A0A1W2PS18 150 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 S100A4P26447 101 aaKnown RBP8.52□□□□□ -1.05
CLIP1-213ENST00000540338 PSG3Q16557 428 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 PRORYQ9H606 182 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 SPTBN4Q9H254 2564 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 TRAV41A0A0B4J266 112 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 A0A1B0GW15 77 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 SH2D7A6NKC9 451 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-213ENST00000540338 ATP6V0E1O15342 81 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 HNRNPA3P51991 378 aaKnown RBP8.52□□□□□ -1.05
CLIP1-213ENST00000540338 TWIST1Q15672 202 aa8.52□□□□□ -1.05
CLIP1-213ENST00000540338 IGKV3-7A0A075B6H7 116 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 MAP1LC3CQ9BXW4 147 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 MRPL27Q9P0M9 148 aaKnown RBP8.51□□□□□ -1.05
CLIP1-213ENST00000540338 LINC00527Q9UJ94 153 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 PMCHL1Q16048 86 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 CT83Q5H943 113 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 TMEM191AQ9H0A3 160 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 HSPB8Q9UJY1 196 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 ODF3BA8MYP8 253 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 NDUFS8O00217 210 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 LEPROTL1O95214 131 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 FAM120AOSQ5T036 256 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 SLC50A1Q9BRV3 221 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 NAV3Q8IVL0 2385 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 TANC2Q9HCD6 1990 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 IGLV11-55A0A075B6I3 123 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 M0QZK8 103 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 ASPHD1Q5U4P2 390 aa8.51□□□□□ -1.05
CLIP1-213ENST00000540338 MYO15AQ9UKN7 3530 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 ARL3P36405 182 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 ZNF738Q8NE65 137 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 CFHR4Q92496 578 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 ZNF292O60281 2723 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 OR5AL1P0C617 328 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 GFRA4Q9GZZ7 299 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 IGKV2-40A0A087WW87 121 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-213ENST00000540338 TRBV7-1A0A0A6YYK4 115 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 PSMB11A5LHX3 300 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 IGKV2D-40P01614 121 aaPredicted RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms