RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 MPV17P39210 176 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 PAX8Q06710 450 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 FOXI1Q12951 378 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 TWIST1Q15672 202 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 RRN3P1Q2M238 152 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 KLF17Q5JT82 389 aaPredicted RBP5.34□□□□□ -1.55
USP28-207ENST00000538475 FAM104BQ5XKR9 115 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 INO80CQ6PI98 192 aaPredicted RBP5.34□□□□□ -1.55
USP28-207ENST00000538475 Q6Q795 121 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 ZNF562Q6V9R5 426 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 COX8CQ7Z4L0 72 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 Q86TA4 180 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 C11orf53Q8IXP5 236 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 CIARTQ8N365 385 aaPredicted RBP5.34□□□□□ -1.55
USP28-207ENST00000538475 RAB37Q96AX2 223 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 CHAC1Q9BUX1 264 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 NXT2Q9NPJ8 142 aaKnown RBP5.34□□□□□ -1.55
USP28-207ENST00000538475 NDUFA4L2Q9NRX3 87 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 PRO0461Q9UI25 63 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 HILPDAQ9Y5L2 63 aa5.34□□□□□ -1.55
USP28-207ENST00000538475 A0A096LNJ9 63 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 ZNF785A8K8V0 405 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 SPINK8P0C7L1 97 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 GCSHP23434 173 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 FCER1GP30273 86 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 PRDX2P32119 198 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 ASIPP42127 132 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 CACNG7P62955 275 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 WFDC2Q14508 124 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 C12orf74Q32Q52 190 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 Q5PR19 223 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 PATE2Q6UY27 113 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 RBMXL3Q8N7X1 1067 aaKnown RBP5.33□□□□□ -1.56
USP28-207ENST00000538475 OR8A1Q8NGG7 326 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 UBALD1Q8TB05 177 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 PPDPFLQ8WWR9 84 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 TMEM158Q8WZ71 300 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 LINC00479Q96M42 142 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 PRELID3AQ96N28 172 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 WWC2-AS2Q96NR7 200 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 FAM173AQ9BQD7 235 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 SPANXCQ9NY87 97 aa5.33□□□□□ -1.56
USP28-207ENST00000538475 CEP350Q5VT06 3117 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 TRBV20-1A0A075B6N2 111 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 TRBV25-1A0A075B6N4 114 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 SRRM5B3KS81 715 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 OVOL3O00110 214 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 NDUFS7O75251 213 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 DPM2O94777 84 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 APOMO95445 188 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 NCR2O95944 276 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 GRPP07492 148 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 CCL2P13500 99 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 TNFRSF1AP19438 455 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 FOLR3P41439 243 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 FXYD2P54710 66 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 PLGLAQ15195 96 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 CDSNQ15517 529 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 ETDBQ3ZM63 59 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 ZFAND6Q6FIF0 208 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 LINC00305Q7Z4B0 112 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 MDP1Q86V88 176 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 TUSC5Q8IXB3 177 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 C1orf162Q8NEQ5 155 aaPredicted RBP5.32□□□□□ -1.56
USP28-207ENST00000538475 TMEM167AQ8TBQ9 72 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 DLX4Q92988 240 aaPredicted RBP5.32□□□□□ -1.56
USP28-207ENST00000538475 LINC01600Q96MT4 127 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 KRTAP17-1Q9BYP8 105 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 FAM234AQ9H0X4 552 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 CALYQ9NYX4 217 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 TP73-AS1Q9UF72 201 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 PRR14LQ5THK1 2151 aa5.32□□□□□ -1.56
USP28-207ENST00000538475 INTS1Q8N201 2190 aaKnown RBP5.31□□□□□ -1.56
USP28-207ENST00000538475 IGHV3-43A0A0B4J1X8 118 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 TRAV5A0A0B4J249 113 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 IGHV5-10-1A0A0J9YXX1 117 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 NPIPB5A8MRT5 1133 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 K7EM74 188 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 NKX2-8O15522 239 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 IGKCP01834 107 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 IGHV3-43DP0DP04 118 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 PYYP10082 97 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 GP9P14770 177 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 SRD5A1P18405 259 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 IFI27P40305 119 aaPredicted RBP5.31□□□□□ -1.56
USP28-207ENST00000538475 NMUP48645 174 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 ZNF137PP52743 207 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 ODF1Q14990 250 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 MRPL23Q16540 153 aaKnown RBP5.31□□□□□ -1.56
USP28-207ENST00000538475 RPL39P5Q59GN2 51 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 Q6ZUT4 128 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 MOB3BQ86TA1 216 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 PCP2Q8IVA1 136 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 SBSPONQ8IVN8 264 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 SLC25A45Q8N413 288 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 C8orf31Q8N9H6 132 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 TMEM116Q8NCL8 245 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 OR4C13Q8NGP0 309 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 Q9H3A6 140 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 MAP1LC3AQ9H492 121 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms