RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 Q71RC1 249 aaPredicted RBP15.29■□□□□ 0.04
VPS28-213ENST00000530983 MUC15Q8N387 334 aa15.29■□□□□ 0.04
VPS28-213ENST00000530983 SRSF12Q8WXF0 261 aaKnown RBP15.29■□□□□ 0.04
VPS28-213ENST00000530983 SLC25A39Q9BZJ4 359 aaPredicted RBP15.29■□□□□ 0.04
VPS28-213ENST00000530983 GFRA4Q9GZZ7 299 aa15.29■□□□□ 0.04
VPS28-213ENST00000530983 SOX21Q9Y651 276 aaPredicted RBP15.29■□□□□ 0.04
VPS28-213ENST00000530983 NPIPB6E9PJ23 425 aa15.29■□□□□ 0.04
VPS28-213ENST00000530983 COTL1Q14019 142 aa15.29■□□□□ 0.04
VPS28-213ENST00000530983 SPATA12Q7Z6I5 190 aa15.29■□□□□ 0.04
VPS28-213ENST00000530983 OTORQ9NRC9 128 aa15.29■□□□□ 0.04
VPS28-213ENST00000530983 IGLV2-11P01706 119 aa15.28■□□□□ 0.04
VPS28-213ENST00000530983 FAM120AOSQ5T036 256 aa15.28■□□□□ 0.04
VPS28-213ENST00000530983 RBPMS2Q6ZRY4 209 aaKnown RBP15.28■□□□□ 0.04
VPS28-213ENST00000530983 DAZAP1Q96EP5 407 aaKnown RBP15.28■□□□□ 0.04
VPS28-213ENST00000530983 TMEM14CQ9P0S9 112 aa15.28■□□□□ 0.04
VPS28-213ENST00000530983 SH2D7A6NKC9 451 aaPredicted RBP15.28■□□□□ 0.04
VPS28-213ENST00000530983 M0QZ24 198 aa15.28■□□□□ 0.04
VPS28-213ENST00000530983 COX7A1P24310 79 aa15.28■□□□□ 0.04
VPS28-213ENST00000530983 EXOC3-AS1Q8N2X6 119 aa15.28■□□□□ 0.04
VPS28-213ENST00000530983 CIARTQ8N365 385 aaPredicted RBP15.28■□□□□ 0.04
VPS28-213ENST00000530983 CLEC5AQ9NY25 188 aa15.28■□□□□ 0.04
VPS28-213ENST00000530983 TP73-AS1Q9UF72 201 aa15.28■□□□□ 0.04
VPS28-213ENST00000530983 B9A039 149 aa15.27■□□□□ 0.04
VPS28-213ENST00000530983 RBPJQ06330 500 aa15.27■□□□□ 0.04
VPS28-213ENST00000530983 IGKV1-17P01599 117 aa15.27■□□□□ 0.03
VPS28-213ENST00000530983 HOXB4P17483 251 aaPredicted RBP15.27■□□□□ 0.03
VPS28-213ENST00000530983 OR4C5Q8NGB2 326 aa15.27■□□□□ 0.03
VPS28-213ENST00000530983 RPEQ96AT9 228 aa15.27■□□□□ 0.03
VPS28-213ENST00000530983 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.26■□□□□ 0.03
VPS28-213ENST00000530983 GOLT1AQ6ZVE7 132 aa15.26■□□□□ 0.03
VPS28-213ENST00000530983 RASL11BQ9BPW5 248 aa15.26■□□□□ 0.03
VPS28-213ENST00000530983 DCHS2Q6V1P9 2916 aa15.26■□□□□ 0.03
VPS28-213ENST00000530983 FAM231BA6NCW3 169 aa15.26■□□□□ 0.03
VPS28-213ENST00000530983 TOX4O94842 621 aa15.26■□□□□ 0.03
VPS28-213ENST00000530983 RBP4P02753 201 aa15.26■□□□□ 0.03
VPS28-213ENST00000530983 COL8A1P27658 744 aa15.26■□□□□ 0.03
VPS28-213ENST00000530983 PPIAL4CA0A0B4J2A2 164 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 PPIAL4GP0DN37 164 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 ERASQ7Z444 233 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 PRNTQ86SH4 94 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 TMEM70Q9BUB7 260 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 TPRP12270 2363 aaKnown RBP15.25■□□□□ 0.03
VPS28-213ENST00000530983 LRBAP50851 2863 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 IGHV1-24A0A0C4DH33 117 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 ZNF785A8K8V0 405 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 LY6LH3BQJ8 138 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 OVOL3O00110 214 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 APOHP02749 345 aaPredicted RBP15.25■□□□□ 0.03
VPS28-213ENST00000530983 CD3EP07766 207 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 RNF151Q2KHN1 245 aa15.25■□□□□ 0.03
VPS28-213ENST00000530983 PLGLAQ15195 96 aa15.24■□□□□ 0.03
VPS28-213ENST00000530983 LDLRAD2Q5SZI1 272 aa15.24■□□□□ 0.03
VPS28-213ENST00000530983 FAM162BQ5T6X4 162 aa15.24■□□□□ 0.03
VPS28-213ENST00000530983 C16orf54Q6UWD8 224 aa15.24■□□□□ 0.03
VPS28-213ENST00000530983 LOC102724200A0A096LPH7 203 aaPredicted RBP15.23■□□□□ 0.03
VPS28-213ENST00000530983 K7EIM0 57 aa15.23■□□□□ 0.03
VPS28-213ENST00000530983 CHCHD1Q96BP2 118 aaKnown RBP15.23■□□□□ 0.03
VPS28-213ENST00000530983 CRXO43186 299 aaPredicted RBP15.23■□□□□ 0.03
VPS28-213ENST00000530983 VAMP3Q15836 100 aa15.23■□□□□ 0.03
VPS28-213ENST00000530983 C17orf77Q96MU5 243 aa15.23■□□□□ 0.03
VPS28-213ENST00000530983 TRBV19A0A075B6N1 114 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 TRAV30A0A087WSZ9 112 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 LINC00173Q6ZV60 143 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 RNF5Q99942 180 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 NDFIP1Q9BT67 221 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 C1RLQ9NZP8 487 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 HAX1O00165 279 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 CHEK1O14757 476 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 TIMM23O14925 209 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 MPV17L2Q567V2 206 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 SHANK2-AS3Q9BTD1 123 aa15.22■□□□□ 0.03
VPS28-213ENST00000530983 SPTBN2O15020 2390 aa15.21■□□□□ 0.03
VPS28-213ENST00000530983 TRBV6-1A0A0K0K1D8 114 aa15.21■□□□□ 0.03
VPS28-213ENST00000530983 CNIH1O95406 144 aa15.21■□□□□ 0.03
VPS28-213ENST00000530983 ZC2HC1AQ96GY0 325 aa15.21■□□□□ 0.03
VPS28-213ENST00000530983 SRSF8Q9BRL6 282 aaKnown RBP15.21■□□□□ 0.03
VPS28-213ENST00000530983 H3BRN7 92 aa15.21■□□□□ 0.02
VPS28-213ENST00000530983 RPS20P60866 119 aaKnown RBP15.21■□□□□ 0.02
VPS28-213ENST00000530983 SCNM1Q9BWG6 230 aa15.21■□□□□ 0.02
VPS28-213ENST00000530983 SIGLEC15Q6ZMC9 328 aa15.2■□□□□ 0.02
VPS28-213ENST00000530983 BPIFA4PQ86YQ2 179 aa15.2■□□□□ 0.02
VPS28-213ENST00000530983 LINC01560Q8TB33 94 aa15.2■□□□□ 0.02
VPS28-213ENST00000530983 ASCL2Q99929 193 aa15.2■□□□□ 0.02
VPS28-213ENST00000530983 OR4C46A6NHA9 309 aa15.2■□□□□ 0.02
VPS28-213ENST00000530983 SYS1-DBNDD2H3BUS1 97 aa15.2■□□□□ 0.02
VPS28-213ENST00000530983 PRB4P10163 310 aaPredicted RBP15.2■□□□□ 0.02
VPS28-213ENST00000530983 RHOGP84095 191 aa15.2■□□□□ 0.02
VPS28-213ENST00000530983 TMEM75Q8N9X5 138 aa15.2■□□□□ 0.02
VPS28-213ENST00000530983 ONECUT1Q9UBC0 465 aa15.2■□□□□ 0.02
VPS28-213ENST00000530983 CSMD1Q96PZ7 3565 aa15.19■□□□□ 0.02
VPS28-213ENST00000530983 TAX1BP3O14907 124 aa15.19■□□□□ 0.02
VPS28-213ENST00000530983 LEPROTL1O95214 131 aa15.19■□□□□ 0.02
VPS28-213ENST00000530983 ZNF491Q8N8L2 437 aa15.19■□□□□ 0.02
VPS28-213ENST00000530983 ZNF138P52744 262 aa15.18■□□□□ 0.02
VPS28-213ENST00000530983 VKORC1Q9BQB6 163 aa15.18■□□□□ 0.02
VPS28-213ENST00000530983 RNF24Q9Y225 148 aa15.18■□□□□ 0.02
VPS28-213ENST00000530983 ARHGAP32A7KAX9 2087 aa15.18■□□□□ 0.02
VPS28-213ENST00000530983 RELNP78509 3460 aa15.18■□□□□ 0.02
VPS28-213ENST00000530983 TLN1Q9Y490 2541 aaKnown RBP15.18■□□□□ 0.02
VPS28-213ENST00000530983 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms