RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 OR4X2Q8NGF9 303 aa16.36■□□□□ 0.21
VPS28-212ENST00000530836 SERTAD4Q9NUC0 356 aa16.36■□□□□ 0.21
VPS28-212ENST00000530836 TMEM190Q8WZ59 177 aa16.35■□□□□ 0.21
VPS28-212ENST00000530836 ZFAND3Q9H8U3 227 aa16.35■□□□□ 0.21
VPS28-212ENST00000530836 SNAPINO95295 136 aa16.34■□□□□ 0.21
VPS28-212ENST00000530836 GP9P14770 177 aa16.34■□□□□ 0.21
VPS28-212ENST00000530836 FAM74A3Q4VXF1 159 aa16.34■□□□□ 0.21
VPS28-212ENST00000530836 FXYD5Q96DB9 178 aa16.34■□□□□ 0.21
VPS28-212ENST00000530836 YTHDF2Q9Y5A9 579 aaKnown RBP16.34■□□□□ 0.21
VPS28-212ENST00000530836 ZNF98A6NK75 572 aa16.34■□□□□ 0.21
VPS28-212ENST00000530836 NDUFA4O00483 81 aa16.34■□□□□ 0.21
VPS28-212ENST00000530836 PYYP10082 97 aa16.34■□□□□ 0.21
VPS28-212ENST00000530836 MYOZ3Q8TDC0 251 aa16.34■□□□□ 0.21
VPS28-212ENST00000530836 GGCTO75223 188 aaKnown RBP16.33■□□□□ 0.2
VPS28-212ENST00000530836 NBEAP1P0C6P0 100 aa16.33■□□□□ 0.2
VPS28-212ENST00000530836 CEBPGP53567 150 aa16.33■□□□□ 0.2
VPS28-212ENST00000530836 OR4F17Q8NGA8 305 aa16.33■□□□□ 0.2
VPS28-212ENST00000530836 TCEAL7Q9BRU2 100 aa16.33■□□□□ 0.2
VPS28-212ENST00000530836 PEF1Q9UBV8 284 aaKnown RBP16.33■□□□□ 0.2
VPS28-212ENST00000530836 RNF114Q9Y508 228 aa16.33■□□□□ 0.2
VPS28-212ENST00000530836 PPP5D1E7EU14 171 aa16.32■□□□□ 0.2
VPS28-212ENST00000530836 IGHV3-11P01762 117 aa16.32■□□□□ 0.2
VPS28-212ENST00000530836 HIST1H1EP10412 219 aaKnown RBP16.32■□□□□ 0.2
VPS28-212ENST00000530836 ATP5G3P48201 142 aa16.32■□□□□ 0.2
VPS28-212ENST00000530836 KIAA0141Q14154 515 aaPredicted RBP16.32■□□□□ 0.2
VPS28-212ENST00000530836 FAM90A2PQ658T7 463 aa16.32■□□□□ 0.2
VPS28-212ENST00000530836 ZNF414Q96IQ9 312 aa16.32■□□□□ 0.2
VPS28-212ENST00000530836 UBE2E2Q96LR5 201 aa16.32■□□□□ 0.2
VPS28-212ENST00000530836 NIPSNAP3BQ9BS92 247 aa16.32■□□□□ 0.2
VPS28-212ENST00000530836 RPL7P18124 248 aaKnown RBP16.31■□□□□ 0.2
VPS28-212ENST00000530836 LEMD1Q68G75 181 aa16.31■□□□□ 0.2
VPS28-212ENST00000530836 C12orf54Q6X4T0 127 aa16.31■□□□□ 0.2
VPS28-212ENST00000530836 GPR82Q96P67 336 aa16.31■□□□□ 0.2
VPS28-212ENST00000530836 METTL26Q96S19 204 aa16.31■□□□□ 0.2
VPS28-212ENST00000530836 TENM1Q9UKZ4 2725 aa16.31■□□□□ 0.2
VPS28-212ENST00000530836 PROK1P58294 105 aa16.3■□□□□ 0.2
VPS28-212ENST00000530836 GUCA2BQ16661 112 aa16.3■□□□□ 0.2
VPS28-212ENST00000530836 LCNL1Q6ZST4 164 aa16.3■□□□□ 0.2
VPS28-212ENST00000530836 KLHDC1Q8N7A1 406 aa16.3■□□□□ 0.2
VPS28-212ENST00000530836 IGHV3-35A0A0C4DH35 117 aa16.3■□□□□ 0.2
VPS28-212ENST00000530836 RPLP1P05386 114 aaKnown RBP16.3■□□□□ 0.2
VPS28-212ENST00000530836 NPPCP23582 126 aa16.3■□□□□ 0.2
VPS28-212ENST00000530836 C1orf194Q5T5A4 169 aa16.3■□□□□ 0.2
VPS28-212ENST00000530836 SPATA3Q8NHX4 192 aa16.3■□□□□ 0.2
VPS28-212ENST00000530836 C10orf99Q6UWK7 81 aa16.29■□□□□ 0.2
VPS28-212ENST00000530836 C11orf52Q96A22 123 aa16.29■□□□□ 0.2
VPS28-212ENST00000530836 RPUSD4Q96CM3 377 aaKnown RBP16.29■□□□□ 0.2
VPS28-212ENST00000530836 STAB1Q9NY15 2570 aa16.29■□□□□ 0.2
VPS28-212ENST00000530836 ZNF727A8MUV8 499 aa16.28■□□□□ 0.2
VPS28-212ENST00000530836 TRBV12-3P01733 135 aa16.28■□□□□ 0.2
VPS28-212ENST00000530836 LGALS1P09382 135 aaKnown RBP16.28■□□□□ 0.2
VPS28-212ENST00000530836 CRYBB3P26998 211 aa16.28■□□□□ 0.2
VPS28-212ENST00000530836 SUMO1P63165 101 aaKnown RBP16.28■□□□□ 0.2
VPS28-212ENST00000530836 PNRC1Q12796 327 aaPredicted RBP16.28■□□□□ 0.2
VPS28-212ENST00000530836 PARLQ9H300 379 aa16.28■□□□□ 0.2
VPS28-212ENST00000530836 GGTLC3B5MD39 225 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 H3BQ15 152 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 HAX1O00165 279 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 MRPS12O15235 138 aaKnown RBP16.27■□□□□ 0.2
VPS28-212ENST00000530836 IGLC2P0DOY2 106 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 PDE6HQ13956 83 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 OR8I2Q8N0Y5 310 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 LYPD1Q8N2G4 141 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 C3orf56Q8N813 242 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 CLRN3Q8NCR9 226 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 WFDC12Q8WWY7 111 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 TVP23CQ96ET8 276 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 SMIM7Q9BQ49 75 aa16.27■□□□□ 0.2
VPS28-212ENST00000530836 BUB3O43684 328 aa16.27■□□□□ 0.19
VPS28-212ENST00000530836 FAM106AQ4KMX7 169 aa16.27■□□□□ 0.19
VPS28-212ENST00000530836 GPHB5Q86YW7 130 aa16.27■□□□□ 0.19
VPS28-212ENST00000530836 BLNKQ8WV28 456 aa16.27■□□□□ 0.19
VPS28-212ENST00000530836 U3KQE9 123 aa16.27■□□□□ 0.19
VPS28-212ENST00000530836 TRBV19A0A075B6N1 114 aa16.26■□□□□ 0.19
VPS28-212ENST00000530836 C20orf24Q9BUV8 137 aa16.26■□□□□ 0.19
VPS28-212ENST00000530836 ZNF747Q9BV97 191 aa16.26■□□□□ 0.19
VPS28-212ENST00000530836 ZNF586Q9NXT0 402 aa16.26■□□□□ 0.19
VPS28-212ENST00000530836 NAT8Q9UHE5 227 aa16.26■□□□□ 0.19
VPS28-212ENST00000530836 NDUFB4O95168 129 aa16.25■□□□□ 0.19
VPS28-212ENST00000530836 MYCNOSP40205 109 aa16.25■□□□□ 0.19
VPS28-212ENST00000530836 CDX1P47902 265 aaPredicted RBP16.25■□□□□ 0.19
VPS28-212ENST00000530836 RANP62826 216 aaKnown RBP16.25■□□□□ 0.19
VPS28-212ENST00000530836 SCO2A0A1W2PP80 73 aa16.24■□□□□ 0.19
VPS28-212ENST00000530836 MEOX2P50222 304 aa16.24■□□□□ 0.19
VPS28-212ENST00000530836 RHEBQ15382 184 aa16.24■□□□□ 0.19
VPS28-212ENST00000530836 TMEM241Q24JQ0 296 aa16.24■□□□□ 0.19
VPS28-212ENST00000530836 ZNF674Q2M3X9 581 aa16.24■□□□□ 0.19
VPS28-212ENST00000530836 HIST1H2BAQ96A08 127 aa16.24■□□□□ 0.19
VPS28-212ENST00000530836 OTORQ9NRC9 128 aa16.24■□□□□ 0.19
VPS28-212ENST00000530836 A0A1W2PS18 150 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 K7EMT4 169 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 M0R036 132 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 KRTAP10-3P60369 221 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 RPEL1Q2QD12 228 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 WIPF2Q8TF74 440 aaPredicted RBP16.23■□□□□ 0.19
VPS28-212ENST00000530836 ELOVL1Q9BW60 279 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 Q9H3A6 140 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 SDF2L1Q9HCN8 221 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 IGHV3OR16-8A0A075B7F1 116 aa16.23■□□□□ 0.19
VPS28-212ENST00000530836 B4DEV8 164 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms