RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 ZNF491Q8N8L2 437 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 OR5B12Q96R08 314 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 PYGO2Q9BRQ0 406 aa14.68□□□□□ -0.06
VPS28-207ENST00000526977 K7EN84 100 aa14.67□□□□□ -0.06
VPS28-207ENST00000526977 S100A6P06703 90 aa14.67□□□□□ -0.06
VPS28-207ENST00000526977 NBEAP1P0C6P0 100 aa14.67□□□□□ -0.06
VPS28-207ENST00000526977 GP9P14770 177 aa14.67□□□□□ -0.06
VPS28-207ENST00000526977 MYCNOSP40205 109 aa14.67□□□□□ -0.06
VPS28-207ENST00000526977 YPEL3P61236 119 aaPredicted RBP14.67□□□□□ -0.06
VPS28-207ENST00000526977 SFRP2Q96HF1 295 aa14.67□□□□□ -0.06
VPS28-207ENST00000526977 FBXL7Q9UJT9 491 aa14.67□□□□□ -0.06
VPS28-207ENST00000526977 FAM181BA6NEQ2 426 aa14.66□□□□□ -0.06
VPS28-207ENST00000526977 RNASE1P07998 156 aaKnown RBP14.66□□□□□ -0.06
VPS28-207ENST00000526977 RANP62826 216 aaKnown RBP14.66□□□□□ -0.06
VPS28-207ENST00000526977 BLNKQ8WV28 456 aa14.66□□□□□ -0.06
VPS28-207ENST00000526977 MTORP42345 2549 aa14.66□□□□□ -0.06
VPS28-207ENST00000526977 WI2-2373I1.2A0A1W2PRP0 233 aa14.66□□□□□ -0.06
VPS28-207ENST00000526977 CYSRT1A8MQ03 144 aa14.66□□□□□ -0.06
VPS28-207ENST00000526977 PPP1R2P9O14990 202 aa14.66□□□□□ -0.06
VPS28-207ENST00000526977 S100PP25815 95 aa14.66□□□□□ -0.06
VPS28-207ENST00000526977 Q56UQ5 140 aa14.66□□□□□ -0.06
VPS28-207ENST00000526977 VN1R17PQ8TDU5 208 aa14.66□□□□□ -0.06
VPS28-207ENST00000526977 CRLF1O75462 422 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 IGHV3-23P01764 117 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 TRGC2P03986 189 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 GNG4P50150 75 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 RHOGP84095 191 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 CENPWQ5EE01 88 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 UBE2CO00762 179 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 CFHR3Q02985 330 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 TEX38Q6PEX7 206 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 ZNF600Q6ZNG1 722 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 RNF125Q96EQ8 232 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 LINC00479Q96M42 142 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 TMEM14CQ9P0S9 112 aa14.65□□□□□ -0.06
VPS28-207ENST00000526977 FAM223BA6NKX1 122 aa14.64□□□□□ -0.07
VPS28-207ENST00000526977 IGLV1-40P01703 118 aa14.64□□□□□ -0.07
VPS28-207ENST00000526977 IL4P05112 153 aa14.64□□□□□ -0.07
VPS28-207ENST00000526977 AKR1D1P51857 326 aa14.64□□□□□ -0.07
VPS28-207ENST00000526977 C15orf32Q32M92 178 aa14.64□□□□□ -0.07
VPS28-207ENST00000526977 FAM223AQ8IWN6 122 aa14.64□□□□□ -0.07
VPS28-207ENST00000526977 MS4A10Q96PG2 267 aa14.64□□□□□ -0.07
VPS28-207ENST00000526977 TXN2Q99757 166 aa14.64□□□□□ -0.07
VPS28-207ENST00000526977 SHANK2-AS3Q9BTD1 123 aa14.64□□□□□ -0.07
VPS28-207ENST00000526977 TMEM89A2RUT3 159 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 PGPA6NDG6 321 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 TMEM95Q3KNT9 176 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 OR10G8Q8NGN5 311 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 IGHG4P01861 327 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 TRGV3P03979 118 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 CTSGP08311 255 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 FCGR2BP31994 310 aaPredicted RBP14.63□□□□□ -0.07
VPS28-207ENST00000526977 SLC35B1P78383 322 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 FABP9Q0Z7S8 132 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 IGF2BP2-AS1Q96M15 143 aa14.63□□□□□ -0.07
VPS28-207ENST00000526977 OR2T8A6NH00 312 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 H3BRN7 92 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 H3BTX0 84 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 PEX7O00628 323 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 PHOX2AO14813 284 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 GGCTO75223 188 aaKnown RBP14.62□□□□□ -0.07
VPS28-207ENST00000526977 IGLV2-8P01709 118 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 FAM3BP58499 235 aaPredicted RBP14.62□□□□□ -0.07
VPS28-207ENST00000526977 TAS2R60P59551 318 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 OR5I1Q13606 314 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 LINC00518Q8N0U6 118 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 USMG5Q96IX5 58 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 IMMP2LQ96T52 175 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 EPDR1Q9UM22 224 aa14.62□□□□□ -0.07
VPS28-207ENST00000526977 TGOLN2O43493 480 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H2BKO60814 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H2BJP06899 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H1EP10412 219 aaKnown RBP14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H2BOP23527 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H2BBP33778 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H2BDP58876 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H2BCP62807 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 ATP5G2Q06055 141 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 FOXL1Q12952 345 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 USF2Q15853 346 aaPredicted RBP14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST2H2BEQ16778 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.61□□□□□ -0.07
VPS28-207ENST00000526977 Q6ZSV7 163 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H2BHQ93079 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H2BNQ99877 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 HIST1H2BMQ99879 126 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 TCEAL7Q9BRU2 100 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 ZNF586Q9NXT0 402 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 GAR1Q9NY12 217 aaKnown RBP14.61□□□□□ -0.07
VPS28-207ENST00000526977 TRBV7-1A0A0A6YYK4 115 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 A0A1W2PPQ1 181 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 SCGB2A1O75556 95 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 PF4V1P10720 104 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 KCNIP4Q6PIL6 250 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 EEF1AKMT3Q96AZ1 226 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 ATP6V0BQ99437 205 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 CHRDL1Q9BU40 450 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 SRD5A3Q9H8P0 318 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 SERTAD4Q9NUC0 356 aa14.61□□□□□ -0.07
VPS28-207ENST00000526977 TCF21O43680 179 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms