RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CBY1Q9Y3M2 126 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 ZZEF1O43149 2961 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 LOC102724200A0A096LPH7 203 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 TEX45Q8NA69 505 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 ORAOV1Q8WV07 137 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 TMUB1Q9BVT8 246 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 SLC25A39Q9BZJ4 359 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 CUL9Q8IWT3 2517 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 SNAI2O43623 268 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 CNIH1O95406 144 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 IGLC1P0CG04 106 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 VAMP3Q15836 100 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 KLF17Q5JT82 389 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 M0R3E3 92 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 ARMS2P0C7Q2 107 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 Q86TA4 180 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 RASL11BQ9BPW5 248 aa7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 F11RQ9Y624 299 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-215ENST00000512632 TMSB15BA0A087X1C1 80 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 MUC21A0A0G2JKD1 596 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 MUC21A0A140T8X8 626 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 TNFRSF13BO14836 293 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 PCP4P48539 62 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 SPTBN1Q01082 2364 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 MUC21Q5SSG8 566 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 IGHV1-3A0A0C4DH29 117 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 VSTM5A8MXK1 200 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 E7EQL1 145 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 CEP295Q9C0D2 2601 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 TCTAP57738 103 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 UBE2V1Q13404 147 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 MUC15Q8N387 334 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 IGHV1-69-2A0A0G2JMI3 117 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 ZNF785A8K8V0 405 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 TEX22C9J3V5 150 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 IGKV1-17P01599 117 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 RELQ04864 619 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 FAM71F2Q6NXP2 309 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 RPEQ96AT9 228 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 ZNF492Q9P255 531 aa7.35□□□□□ -1.23
LIMCH1-215ENST00000512632 FAM162BQ5T6X4 162 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 ZC2HC1AQ96GY0 325 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 TMEM191AQ9H0A3 160 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 OTORQ9NRC9 128 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 HSBP1L1C9JCN9 74 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 IGLV2-11P01706 119 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 GFRALQ6UXV0 394 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 BCL6BQ8N143 479 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 CHCHD1Q96BP2 118 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 MAP1LC3CQ9BXW4 147 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 PPP1R14DQ9NXH3 145 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 CBY3A6NI87 242 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 CT83Q5H943 113 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 SLC25A34Q6PIV7 304 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 AKAP6Q13023 2319 aa7.34□□□□□ -1.23
LIMCH1-215ENST00000512632 LOC389332A0A1B0GUA5 103 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 A0A1B0GUT8 65 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 APOHP02749 345 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 LIPFP07098 398 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 FCGR2BP31994 310 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 ASCL5Q7RTU5 278 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 SMIM12Q96EX1 92 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 ABHD17AQ96GS6 310 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 ANKHD1Q8IWZ3 2542 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 A0A087X0K7 114 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 SERTM2A0A1B0GWG4 89 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 BUB1B-PAK6H3BSN5 160 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 IGLV1-47P01700 117 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 CRYGBP07316 175 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 FBLN7Q53RD9 439 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 OR4C5Q8NGB2 326 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 PRSS3P2Q8NHM4 247 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 NEU4Q8WWR8 484 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 RALYQ9UKM9 306 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 FXYD7P58549 80 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 PLP1P60201 277 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 C8orf31Q8N9H6 132 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 NDFIP1Q9BT67 221 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 ST20Q9HBF5 79 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 NGBQ9NPG2 151 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 RNF24Q9Y225 148 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 HILPDAQ9Y5L2 63 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 SOX21Q9Y651 276 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 ZNF292O60281 2723 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 CSMD1Q96PZ7 3565 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 I3L2K1 104 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 IL4P05112 153 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 PRR30Q53SZ7 412 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 PSG8Q9UQ74 426 aa7.33□□□□□ -1.24
LIMCH1-215ENST00000512632 LY6HO94772 140 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 FAM106CPP0CH98 169 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 FOXE3Q13461 319 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 FAM106AQ4KMX7 169 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 BPIFA4PQ86YQ2 179 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 AP5S1Q9NUS5 200 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 NPIPB6E9PJ23 425 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 SCNM1Q9BWG6 230 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 GFRA4Q9GZZ7 299 aa7.32□□□□□ -1.24
LIMCH1-215ENST00000512632 KAAG1Q9UBP8 84 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms