RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 FOXC2Q99958 501 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 WISP2O76076 250 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 GRPP07492 148 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 MORN3Q6PF18 240 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 AMN1Q8IY45 258 aa9.66□□□□□ -0.86
LIMCH1-213ENST00000511496 ARFGEF3Q5TH69 2177 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 C19orf71A6NCJ1 209 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 A8MWV9 139 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 PROP1O75360 226 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 KRTAP27-1Q3LI81 207 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 C10orf113Q5VZT2 155 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 PRNTQ86SH4 94 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 S1PR3Q99500 378 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 RNF186Q9NXI6 227 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 FER1L5A0AVI2 2057 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 PCSK5Q92824 1860 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 CEACAM4O75871 244 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 HSPE1P61604 102 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 ANKRD29Q8N6D5 301 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 COQ2Q96H96 371 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 MLST8Q9BVC4 326 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 VCX2Q9H322 139 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 GNG12Q9UBI6 72 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 KLF12Q9Y4X4 402 aa9.65□□□□□ -0.86
LIMCH1-213ENST00000511496 A4D1N5 150 aa9.65□□□□□ -0.87
LIMCH1-213ENST00000511496 CXorf67Q86X51 503 aaPredicted RBP9.65□□□□□ -0.87
LIMCH1-213ENST00000511496 TRAV40A0A0B4J280 105 aa9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 WI2-2373I1.2A0A1W2PRP0 233 aa9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 OOEPA6NGQ2 149 aa9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 SRRM4A7MD48 611 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 CT83Q5H943 113 aa9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 YAF2Q8IY57 180 aa9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 RASL11BQ9BPW5 248 aa9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 GFRA4Q9GZZ7 299 aa9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 SPINT2O43291 252 aa9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 TBC1D28Q2M2D7 210 aa9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 RBMXL3Q8N7X1 1067 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-213ENST00000511496 MUC22E2RYF6 1773 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 J3QT63 122 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 ORM2P19652 201 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 SRSF9Q13242 221 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 EDDM3AQ14507 147 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 NPIPB3Q92617 1050 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 MRPL32Q9BYC8 188 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 CXCL13O43927 109 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 CXCL10P02778 98 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 LINC00694P0DN24 101 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 SSR4P51571 173 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 SLC25A48Q6ZT89 311 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 FXYD5Q96DB9 178 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 TMEM213A2RRL7 107 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 SRSF1Q07955 248 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 OR13A1Q8NGR1 328 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 NRGNQ92686 78 aa9.63□□□□□ -0.87
LIMCH1-213ENST00000511496 C15orf61A6NNL5 157 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 WNT9BO14905 357 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 SCGB1C2P0DMR2 95 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 YPEL5P62699 121 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 TUSC5Q8IXB3 177 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 ORMDL3Q8N138 153 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 RND1Q92730 232 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 RPEQ96AT9 228 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 DEFB126Q9BYW3 111 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 TMEM133Q9H2Q1 129 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 ZNF492Q9P255 531 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 COL5A1P20908 1838 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 CELSR3Q9NYQ7 3312 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 ZFAND5O76080 213 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 CKS2P33552 79 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 LEPP41159 167 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 LINC00305Q7Z4B0 112 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 NFAM1Q8NET5 270 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 CHCHD5Q9BSY4 110 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 TNFRSF1AP19438 455 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 FKBP2P26885 142 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 C3orf36Q3SXR2 165 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 PRNDQ9UKY0 176 aa9.62□□□□□ -0.87
LIMCH1-213ENST00000511496 TRGV8A0A0C4DH27 118 aa9.61□□□□□ -0.87
LIMCH1-213ENST00000511496 SMIM9A6NGZ8 99 aa9.61□□□□□ -0.87
LIMCH1-213ENST00000511496 DPM2O94777 84 aa9.61□□□□□ -0.87
LIMCH1-213ENST00000511496 THBDP07204 575 aa9.61□□□□□ -0.87
LIMCH1-213ENST00000511496 IGLV3-32A0A0A0MS00 114 aa9.61□□□□□ -0.87
LIMCH1-213ENST00000511496 FOXG1P55316 489 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-213ENST00000511496 PATE2Q6UY27 113 aa9.61□□□□□ -0.87
LIMCH1-213ENST00000511496 TMEM158Q8WZ71 300 aa9.61□□□□□ -0.87
LIMCH1-213ENST00000511496 ZGRF1Q86YA3 2104 aa9.61□□□□□ -0.87
LIMCH1-213ENST00000511496 NDUFA3O95167 84 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 NPYP01303 97 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 KIR2DL1P43626 348 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 ZNF826PQ6ZT77 177 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 LEAP2Q969E1 77 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 RAXQ9Y2V3 346 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 TRAV25A0A0B4J276 109 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 TCL1BO95988 128 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 HLA-DRB4P13762 266 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 WDR86Q86TI4 376 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 CALYQ9NYX4 217 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 PROCRQ9UNN8 238 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 HLA-DRB4X5D2U9 266 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 RPL7P18124 248 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms