RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 ODF3BA8MYP8 253 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 M0R143 59 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 NDUFA3O95167 84 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 SSTP61278 116 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 HBBP68871 147 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 KLF5Q13887 457 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-204ENST00000501271 CT83Q5H943 113 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 C11orf71Q6IPW1 123 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 GOLT1AQ6ZVE7 132 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 RBM14Q96PK6 669 aaKnown RBP7.78□□□□□ -1.16
CLIP1-204ENST00000501271 MIEN1Q9BRT3 115 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 SHANK2-AS3Q9BTD1 123 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 A8MWL6 223 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 H3BRN7 92 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 HOXB4P17483 251 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-204ENST00000501271 PRNTQ86SH4 94 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 NPBQ8NG41 125 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 TIMD4Q96H15 378 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 PGLYRP4Q96LB8 373 aa7.78□□□□□ -1.16
CLIP1-204ENST00000501271 TRBV19A0A075B6N1 114 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 LOC105371242A0A075B767 164 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 NPIPB6E9PJ23 425 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 IL4P05112 153 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 IGLC2P0DOY2 106 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 CTRLP40313 264 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 HES1Q14469 280 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 BCL6BQ8N143 479 aaPredicted RBP7.77□□□□□ -1.17
CLIP1-204ENST00000501271 ZNF491Q8N8L2 437 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 OR4B1Q8NGF8 309 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 ASCL2Q99929 193 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 WNK2Q9Y3S1 2297 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 COL6A6A6NMZ7 2263 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 ZNF785A8K8V0 405 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 M0R1W7 72 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 CEACAM3P40198 252 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 KLRB1Q12918 225 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 C5orf64Q2M2E5 130 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 RNASEKQ6P5S7 137 aaKnown RBP7.77□□□□□ -1.17
CLIP1-204ENST00000501271 DYNAPQ8N1N2 210 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 DAZAP1Q96EP5 407 aaKnown RBP7.77□□□□□ -1.17
CLIP1-204ENST00000501271 RNF125Q96EQ8 232 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 URB1-AS1Q96HZ7 61 aa7.77□□□□□ -1.17
CLIP1-204ENST00000501271 MRPS12O15235 138 aaKnown RBP7.76□□□□□ -1.17
CLIP1-204ENST00000501271 HSBP1O75506 76 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 HLA-DRB1P01911 266 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 PRTN3P24158 256 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 COL8A1P27658 744 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 NDPQ00604 133 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 SIGLEC15Q6ZMC9 328 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 RBPMS2Q6ZRY4 209 aaKnown RBP7.76□□□□□ -1.17
CLIP1-204ENST00000501271 BPIFA4PQ86YQ2 179 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 KIR3DL3Q8N743 410 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 GFRA4Q9GZZ7 299 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 FOXA3P55318 350 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-204ENST00000501271 SPATA45Q537H7 98 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 OR4F17Q8NGA8 305 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 BORCS7Q96B45 105 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 ZC2HC1AQ96GY0 325 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 FANCD2OSQ96PS1 177 aa7.76□□□□□ -1.17
CLIP1-204ENST00000501271 SPTBN1Q01082 2364 aaKnown RBP7.75□□□□□ -1.17
CLIP1-204ENST00000501271 IGLV11-55A0A075B6I3 123 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 WI2-2373I1.2A0A1W2PRP0 233 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 FAM181BA6NEQ2 426 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 F8W735 103 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-204ENST00000501271 M0QZ24 198 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 M0R2Z0 102 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 OVOL3O00110 214 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 LCN12Q6JVE5 192 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 EBLN2Q6P2I7 272 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 C16orf54Q6UWD8 224 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 VMO1Q7Z5L0 202 aa7.75□□□□□ -1.17
CLIP1-204ENST00000501271 SOX21Q9Y651 276 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-204ENST00000501271 TRBV6-1A0A0K0K1D8 114 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 TCAPO15273 167 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 GNG7O60262 68 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 APOHP02749 345 aaPredicted RBP7.74□□□□□ -1.17
CLIP1-204ENST00000501271 FCGR2BP31994 310 aaPredicted RBP7.74□□□□□ -1.17
CLIP1-204ENST00000501271 ATOH7Q8N100 152 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 TMEM75Q8N9X5 138 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 NEU4Q8WWR8 484 aaPredicted RBP7.74□□□□□ -1.17
CLIP1-204ENST00000501271 ARPC1AQ92747 370 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 ZNF414Q96IQ9 312 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 MED13LQ71F56 2210 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 A0A1W2PPR1 153 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 SH2D7A6NKC9 451 aaPredicted RBP7.74□□□□□ -1.17
CLIP1-204ENST00000501271 NPIPB5A8MRT5 1133 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 M0R3E3 92 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 UCNP55089 124 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 MAJINQ3KP22 176 aa7.74□□□□□ -1.17
CLIP1-204ENST00000501271 HIVEP3Q5T1R4 2406 aa7.73□□□□□ -1.17
CLIP1-204ENST00000501271 FAM231BA6NCW3 169 aa7.73□□□□□ -1.17
CLIP1-204ENST00000501271 NCBP2LA6PVI3 153 aaKnown RBP7.73□□□□□ -1.17
CLIP1-204ENST00000501271 IGHV3-23P01764 117 aa7.73□□□□□ -1.17
CLIP1-204ENST00000501271 ZFP36P26651 326 aaKnown RBP7.73□□□□□ -1.17
CLIP1-204ENST00000501271 PMCHL1Q16048 86 aa7.73□□□□□ -1.17
CLIP1-204ENST00000501271 FAM120AOSQ5T036 256 aa7.73□□□□□ -1.17
CLIP1-204ENST00000501271 ZNF562Q6V9R5 426 aa7.73□□□□□ -1.17
CLIP1-204ENST00000501271 MRPL52Q86TS9 123 aaKnown RBP7.73□□□□□ -1.17
CLIP1-204ENST00000501271 Q8N6K4 173 aa7.73□□□□□ -1.17
CLIP1-204ENST00000501271 C2orf70A6NJV1 201 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms