RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 USP9XQ93008 2570 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 IZUMO1RA6ND01 250 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 SH2D7A6NKC9 451 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 CDPF1Q6NVV7 123 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 SIGLEC15Q6ZMC9 328 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 S100A7AQ86SG5 101 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 CMTM2Q8TAZ6 248 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 TRAV40A0A0B4J280 105 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 WDR73Q6P4I2 378 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 TMEM190Q8WZ59 177 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 USP24Q9UPU5 2620 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 A0A1B0GUS0 222 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 LINC01548A6NM66 108 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 SCGB2A1O75556 95 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 BRD3OSQ6XYD6 125 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 TMEM136Q6ZRR5 245 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 Q86TA4 180 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 ZNF414Q96IQ9 312 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 CHRDL1Q9BU40 450 aa16.48■□□□□ 0.23
CCDC88B-208ENST00000492980 IGLV2-11P01706 119 aa16.47■□□□□ 0.23
CCDC88B-208ENST00000492980 COX19Q49B96 90 aa16.47■□□□□ 0.23
CCDC88B-208ENST00000492980 LYPD1Q8N2G4 141 aa16.47■□□□□ 0.23
CCDC88B-208ENST00000492980 MT-ND6P03923 174 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 AMY1AP04745 511 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 C15orf32Q32M92 178 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 MRPL54Q6P161 138 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 LINC00322Q6ZN03 302 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 GOLT1AQ6ZVE7 132 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 TMEM219Q86XT9 240 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 GBGT1Q8N5D6 347 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 ZNF502Q8TBZ5 544 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 PIFOQ8TCI5 191 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 BBC3Q96PG8 261 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 TRAV8-1A0A0A6YYK1 113 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 GRIFINA4D1Z8 144 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 G3V318 75 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 TMEM256Q8N2U0 113 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 ZNF492Q9P255 531 aa16.46■□□□□ 0.23
CCDC88B-208ENST00000492980 RHOGP84095 191 aa16.45■□□□□ 0.22
CCDC88B-208ENST00000492980 NAT8BQ9UHF3 227 aa16.45■□□□□ 0.22
CCDC88B-208ENST00000492980 MOB4Q9Y3A3 225 aa16.45■□□□□ 0.22
CCDC88B-208ENST00000492980 CACNA1BQ00975 2339 aa16.45■□□□□ 0.22
CCDC88B-208ENST00000492980 TRBV6-1A0A0K0K1D8 114 aa16.45■□□□□ 0.22
CCDC88B-208ENST00000492980 IGHV4-38-2P0DP08 117 aa16.45■□□□□ 0.22
CCDC88B-208ENST00000492980 TSKUQ8WUA8 353 aa16.45■□□□□ 0.22
CCDC88B-208ENST00000492980 C19orf71A6NCJ1 209 aa16.44■□□□□ 0.22
CCDC88B-208ENST00000492980 NUP35Q8NFH5 326 aa16.44■□□□□ 0.22
CCDC88B-208ENST00000492980 TMEM18Q96B42 140 aa16.44■□□□□ 0.22
CCDC88B-208ENST00000492980 PRSS22Q9GZN4 317 aa16.44■□□□□ 0.22
CCDC88B-208ENST00000492980 MEGF9Q9H1U4 602 aa16.44■□□□□ 0.22
CCDC88B-208ENST00000492980 TP53TG3Q9ULZ0 132 aa16.44■□□□□ 0.22
CCDC88B-208ENST00000492980 VPS13CQ709C8 3753 aa16.44■□□□□ 0.22
CCDC88B-208ENST00000492980 CRISP2P16562 243 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 GPR183P32249 361 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 PDE6HQ13956 83 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 DNLZQ5SXM8 178 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 NRGNQ92686 78 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 RPP21Q9H633 154 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 NUPR1O60356 82 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 MSMBP08118 114 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 PRNTQ86SH4 94 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 NEU1Q99519 415 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 RABAC1Q9UI14 185 aa16.43■□□□□ 0.22
CCDC88B-208ENST00000492980 TMEM75Q8N9X5 138 aa16.42■□□□□ 0.22
CCDC88B-208ENST00000492980 WIPF2Q8TF74 440 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-208ENST00000492980 HLA-DQA1P01909 254 aa16.42■□□□□ 0.22
CCDC88B-208ENST00000492980 RAB4BP61018 213 aa16.42■□□□□ 0.22
CCDC88B-208ENST00000492980 Q71RC1 249 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-208ENST00000492980 JOSD1Q15040 202 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-208ENST00000492980 CT83Q5H943 113 aa16.41■□□□□ 0.22
CCDC88B-208ENST00000492980 RASL11AQ6T310 242 aa16.41■□□□□ 0.22
CCDC88B-208ENST00000492980 CIARTQ8N365 385 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-208ENST00000492980 CCDC140Q96MF4 163 aa16.41■□□□□ 0.22
CCDC88B-208ENST00000492980 ZNF331Q9NQX6 463 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-208ENST00000492980 HIGD1CA8MV81 97 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 DIRC3C9JPN6 131 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 P01737 135 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 RPL7P18124 248 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 LINC00310P59036 64 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 SOX21Q9Y651 276 aaPredicted RBP16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 IGHV3-35A0A0C4DH35 117 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 M0R3E3 92 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 BMPR1BO00238 502 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 CLEC3BP05452 202 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 Q0VG73 95 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 C19orf54Q5BKX5 351 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 ZFAND3Q9H8U3 227 aa16.4■□□□□ 0.22
CCDC88B-208ENST00000492980 PAX1P15863 534 aa16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 TOMM20LQ6UXN7 152 aa16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 MS4A10Q96PG2 267 aa16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 K7EQM0 130 aa16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 CRIP2P52943 208 aaPredicted RBP16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 DSCR9P59020 149 aa16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 PSG3Q16557 428 aa16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 KIAA1644Q3SXP7 199 aa16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 DAZAP1Q96EP5 407 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 AAMDCQ9H7C9 122 aa16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 PSG8Q9UQ74 426 aa16.39■□□□□ 0.21
CCDC88B-208ENST00000492980 IGHV3OR16-8A0A075B7F1 116 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 LINC00587B1AMM8 73 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms