RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 KRTAP21-1Q3LI58 79 aa0.37□□□□□ -2.35
SCN1A-206ENST00000491429 PSMF1Q92530 271 aa0.37□□□□□ -2.35
SCN1A-206ENST00000491429 PHB2Q99623 299 aa0.37□□□□□ -2.35
SCN1A-206ENST00000491429 WFDC10AQ9H1F0 79 aa0.37□□□□□ -2.35
SCN1A-206ENST00000491429 KMT2CQ8NEZ4 4911 aaKnown RBP0.37□□□□□ -2.35
SCN1A-206ENST00000491429 C17orf112F2Z3M2 114 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 GGCTO75223 188 aaKnown RBP0.36□□□□□ -2.35
SCN1A-206ENST00000491429 IFNA6P05013 189 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 CST2P09228 141 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 CXCL8P10145 99 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 CYBAP13498 195 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 HLA-EP13747 358 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 GRINAQ7Z429 371 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 MNS1Q8NEH6 495 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 OR4K15Q8NH41 348 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 ZNF431Q8TF32 576 aaPredicted RBP0.36□□□□□ -2.35
SCN1A-206ENST00000491429 POP5Q969H6 163 aaKnown RBP0.36□□□□□ -2.35
SCN1A-206ENST00000491429 MUCL1Q96DR8 90 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 PBOV1Q9GZY1 135 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 C10orf95Q9H7T3 257 aa0.36□□□□□ -2.35
SCN1A-206ENST00000491429 CECR2Q9BXF3 1484 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 SNRNP200O75643 2136 aaKnown RBP0.35□□□□□ -2.35
SCN1A-206ENST00000491429 RYR2Q92736 4967 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 TTC28Q96AY4 2481 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 PPYP01298 95 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 OR10J4P0C629 311 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 COX7CP15954 63 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 NFYBP25208 207 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 NCALDP61601 193 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 HSPE1P61604 102 aaKnown RBP0.35□□□□□ -2.35
SCN1A-206ENST00000491429 FADDQ13158 208 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 AKIRIN2Q53H80 203 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 LINC00575Q6W349 94 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 OR5D16Q8NGK9 328 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 ZC2HC1AQ96GY0 325 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 ZNF714Q96N38 554 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 MED29Q9NX70 200 aa0.35□□□□□ -2.35
SCN1A-206ENST00000491429 ANKHD1Q8IWZ3 2542 aaKnown RBP0.35□□□□□ -2.35
SCN1A-206ENST00000491429 KMT2DO14686 5537 aa0.34□□□□□ -2.35
SCN1A-206ENST00000491429 ZNF462Q96JM2 2506 aa0.34□□□□□ -2.35
SCN1A-206ENST00000491429 CASP8AP2Q9UKL3 1982 aa0.34□□□□□ -2.35
SCN1A-206ENST00000491429 NCOR1O75376 2440 aa0.34□□□□□ -2.35
SCN1A-206ENST00000491429 TRAV23DV6A0A075B6W5 121 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 IGLV1-51P01701 117 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 EXOC3-AS1Q8N2X6 119 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 CHCHD1Q96BP2 118 aaKnown RBP0.34□□□□□ -2.36
SCN1A-206ENST00000491429 ZHX1-C8orf76Q96EF9 292 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 TEX37Q96LM6 180 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 MIA2Q96PC5 1412 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 NIT2Q9NQR4 276 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 ARMC1Q9NVT9 282 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 OR52A1Q9UKL2 312 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 ARL5AQ9Y689 179 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 KIAA1549Q9HCM3 1950 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 SCN8AQ9UQD0 1980 aa0.34□□□□□ -2.36
SCN1A-206ENST00000491429 MED12Q93074 2177 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 PCF11O94913 1555 aaKnown RBP0.33□□□□□ -2.36
SCN1A-206ENST00000491429 JMJD7-PLA2G4BH0Y9G9 81 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 CRHP06850 196 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 CXCL1P09341 107 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 RAB5CP51148 216 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 SPINK9Q5DT21 86 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 PATE2Q6UY27 113 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 LYSMD1Q96S90 227 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 POPDC3Q9HBV1 291 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 RYR1P21817 5038 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 OBSL1O75147 1896 aa0.33□□□□□ -2.36
SCN1A-206ENST00000491429 HERC1Q15751 4861 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 KIF1BO60333 1816 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 TEP1Q99973 2627 aaKnown RBP0.32□□□□□ -2.36
SCN1A-206ENST00000491429 A0A087WSZ3 146 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 A0A0D9SG42 100 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 DUXBA0A1W2PPF3 345 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 NUPR2A6NF83 97 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 G3V2T6 193 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 NDUFC2O95298 119 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 C1QBP02746 253 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 S100A6P06703 90 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 HSD11B1P28845 292 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 INSL3P51460 131 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 TMBIM6P55061 237 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 ARPP19P56211 112 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 MRPS25P82663 173 aaKnown RBP0.32□□□□□ -2.36
SCN1A-206ENST00000491429 SPATA45Q537H7 98 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 TMEM14EPQ6UXP3 125 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 IFT20Q8IY31 132 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 OR5AS1Q8N127 324 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 CEP19Q96LK0 163 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 PRRT1Q99946 306 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 CCDC94Q9BW85 323 aaPredicted RBP0.32□□□□□ -2.36
SCN1A-206ENST00000491429 EPPK1P58107 5090 aaKnown RBP0.32□□□□□ -2.36
SCN1A-206ENST00000491429 ABCA2Q9BZC7 2435 aa0.32□□□□□ -2.36
SCN1A-206ENST00000491429 PHRF1Q9P1Y6 1649 aaKnown RBP0.31□□□□□ -2.36
SCN1A-206ENST00000491429 CEP164Q9UPV0 1460 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 TMEM210A6NLX4 147 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 K7ERJ3 54 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 PRH1P02810 166 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 GNG5P63218 68 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 TMED2Q15363 201 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 GLIPR1L1Q6UWM5 242 aa0.31□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms