RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 KLHDC1Q8N7A1 406 aa12.28□□□□□ -0.44
SYNE1-227ENST00000489156 TVP23CQ96ET8 276 aa12.28□□□□□ -0.44
SYNE1-227ENST00000489156 GP9P14770 177 aa12.27□□□□□ -0.44
SYNE1-227ENST00000489156 PSMB8P28062 276 aa12.27□□□□□ -0.44
SYNE1-227ENST00000489156 PROK1P58294 105 aa12.27□□□□□ -0.44
SYNE1-227ENST00000489156 RHEBQ15382 184 aa12.27□□□□□ -0.44
SYNE1-227ENST00000489156 BPIFA4PQ86YQ2 179 aa12.27□□□□□ -0.44
SYNE1-227ENST00000489156 SMIM7Q9BQ49 75 aa12.27□□□□□ -0.44
SYNE1-227ENST00000489156 PARLQ9H300 379 aa12.27□□□□□ -0.44
SYNE1-227ENST00000489156 COL6A5A8TX70 2615 aa12.27□□□□□ -0.44
SYNE1-227ENST00000489156 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.27□□□□□ -0.45
SYNE1-227ENST00000489156 M0R036 132 aa12.27□□□□□ -0.45
SYNE1-227ENST00000489156 NBEAP1P0C6P0 100 aa12.27□□□□□ -0.45
SYNE1-227ENST00000489156 SLC35B1P78383 322 aa12.27□□□□□ -0.45
SYNE1-227ENST00000489156 KIAA0141Q14154 515 aaPredicted RBP12.27□□□□□ -0.45
SYNE1-227ENST00000489156 TMEM190Q8WZ59 177 aa12.27□□□□□ -0.45
SYNE1-227ENST00000489156 C11orf52Q96A22 123 aa12.27□□□□□ -0.45
SYNE1-227ENST00000489156 TCEAL7Q9BRU2 100 aa12.27□□□□□ -0.45
SYNE1-227ENST00000489156 KLK15Q9H2R5 256 aa12.27□□□□□ -0.45
SYNE1-227ENST00000489156 A0A1B0GUS0 222 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 ZNF98A6NK75 572 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 B4DEV8 164 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 HIST1H1EP10412 219 aaKnown RBP12.26□□□□□ -0.45
SYNE1-227ENST00000489156 NPPCP23582 126 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 TMEM241Q24JQ0 296 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 AWAT1Q58HT5 328 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 LCNL1Q6ZST4 164 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 TMEM158Q8WZ71 300 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 RPUSD4Q96CM3 377 aaKnown RBP12.26□□□□□ -0.45
SYNE1-227ENST00000489156 SDF2L1Q9HCN8 221 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 NAT8Q9UHE5 227 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 RABAC1Q9UI14 185 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 TENM1Q9UKZ4 2725 aa12.26□□□□□ -0.45
SYNE1-227ENST00000489156 NDUFB4O95168 129 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 SUMO1P63165 101 aaKnown RBP12.25□□□□□ -0.45
SYNE1-227ENST00000489156 BTN1A1Q13410 526 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 LEMD1Q68G75 181 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 TEX38Q6PEX7 206 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 TOMM20LQ6UXN7 152 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 WIPF2Q8TF74 440 aaPredicted RBP12.25□□□□□ -0.45
SYNE1-227ENST00000489156 ZNF414Q96IQ9 312 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 ZFAND3Q9H8U3 227 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 GNB4Q9HAV0 340 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 C7orf77A4D0Y5 90 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 GGTLC3B5MD39 225 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 HIST2H2BDQ6DRA6 164 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 C11orf44Q8N8P7 122 aa12.25□□□□□ -0.45
SYNE1-227ENST00000489156 ELANEP08246 267 aa12.24□□□□□ -0.45
SYNE1-227ENST00000489156 ARL3P36405 182 aa12.24□□□□□ -0.45
SYNE1-227ENST00000489156 FOXE3Q13461 319 aa12.24□□□□□ -0.45
SYNE1-227ENST00000489156 OR4F17Q8NGA8 305 aa12.24□□□□□ -0.45
SYNE1-227ENST00000489156 SCO2A0A1W2PP80 73 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 MYCNOSP40205 109 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 RIPPLY3P57055 190 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 ZNF674Q2M3X9 581 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 RPS10P5Q9NQ39 176 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 A0A087WWC5 75 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 RPL7P18124 248 aaKnown RBP12.23□□□□□ -0.45
SYNE1-227ENST00000489156 KRTAP10-3P60369 221 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 TCTEX1D4Q5JR98 221 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 RNF152Q8N8N0 203 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 OR4X2Q8NGF9 303 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 C20orf24Q9BUV8 137 aa12.23□□□□□ -0.45
SYNE1-227ENST00000489156 IGHV3-35A0A0C4DH35 117 aa12.22□□□□□ -0.45
SYNE1-227ENST00000489156 PPP5D1E7EU14 171 aa12.22□□□□□ -0.45
SYNE1-227ENST00000489156 NDUFA4O00483 81 aa12.22□□□□□ -0.45
SYNE1-227ENST00000489156 MRPS12O15235 138 aaKnown RBP12.22□□□□□ -0.45
SYNE1-227ENST00000489156 RPLP1P05386 114 aaKnown RBP12.22□□□□□ -0.45
SYNE1-227ENST00000489156 IGLC2P0DOY2 106 aa12.22□□□□□ -0.45
SYNE1-227ENST00000489156 RANP62826 216 aaKnown RBP12.22□□□□□ -0.45
SYNE1-227ENST00000489156 LYPD1Q8N2G4 141 aa12.22□□□□□ -0.45
SYNE1-227ENST00000489156 BLNKQ8WV28 456 aa12.22□□□□□ -0.45
SYNE1-227ENST00000489156 ZNF586Q9NXT0 402 aa12.22□□□□□ -0.45
SYNE1-227ENST00000489156 PRELID1Q9Y255 219 aa12.22□□□□□ -0.45
SYNE1-227ENST00000489156 STAB1Q9NY15 2570 aa12.22□□□□□ -0.45
SYNE1-227ENST00000489156 DNASE2O00115 360 aaPredicted RBP12.21□□□□□ -0.45
SYNE1-227ENST00000489156 CD28P10747 220 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 CRYBB3P26998 211 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 PDE6HQ13956 83 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 C1orf194Q5T5A4 169 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 MYOZ3Q8TDC0 251 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 WFDC12Q8WWY7 111 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 HIST1H2BAQ96A08 127 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 GPR82Q96P67 336 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 METTL26Q96S19 204 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 ELOVL1Q9BW60 279 aa12.21□□□□□ -0.45
SYNE1-227ENST00000489156 TRBV19A0A075B6N1 114 aa12.21□□□□□ -0.46
SYNE1-227ENST00000489156 C2CD4CQ8TF44 421 aa12.21□□□□□ -0.46
SYNE1-227ENST00000489156 DERL1Q9BUN8 251 aa12.21□□□□□ -0.46
SYNE1-227ENST00000489156 TUBA4BQ9H853 241 aa12.21□□□□□ -0.46
SYNE1-227ENST00000489156 SMCO4Q9NRQ5 59 aa12.21□□□□□ -0.46
SYNE1-227ENST00000489156 PEF1Q9UBV8 284 aaKnown RBP12.21□□□□□ -0.46
SYNE1-227ENST00000489156 HELTA6NFD8 242 aa12.2□□□□□ -0.46
SYNE1-227ENST00000489156 C9JCJ5 164 aa12.2□□□□□ -0.46
SYNE1-227ENST00000489156 BUB3O43684 328 aa12.2□□□□□ -0.46
SYNE1-227ENST00000489156 GGCTO75223 188 aaKnown RBP12.2□□□□□ -0.46
SYNE1-227ENST00000489156 IGHV3-11P01762 117 aa12.2□□□□□ -0.46
SYNE1-227ENST00000489156 OR8I2Q8N0Y5 310 aa12.2□□□□□ -0.46
SYNE1-227ENST00000489156 OTORQ9NRC9 128 aa12.2□□□□□ -0.46
SYNE1-227ENST00000489156 TMEM242Q9NWH2 141 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms