RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 IGLV2-11P01706 119 aa14.21□□□□□ -0.14
VIM-206ENST00000487938 COL8A1P27658 744 aa14.21□□□□□ -0.14
VIM-206ENST00000487938 Q56UQ5 140 aa14.21□□□□□ -0.14
VIM-206ENST00000487938 Q86TA4 180 aa14.21□□□□□ -0.14
VIM-206ENST00000487938 COL25A1Q9BXS0 654 aaPredicted RBP14.21□□□□□ -0.14
VIM-206ENST00000487938 IGLC2P0DOY2 106 aa14.2□□□□□ -0.14
VIM-206ENST00000487938 IGLC3P0DOY3 106 aa14.2□□□□□ -0.14
VIM-206ENST00000487938 CLEC5AQ9NY25 188 aa14.2□□□□□ -0.14
VIM-206ENST00000487938 MSRB2Q9Y3D2 182 aa14.2□□□□□ -0.14
VIM-206ENST00000487938 LIPFP07098 398 aa14.2□□□□□ -0.14
VIM-206ENST00000487938 KLRD1Q13241 179 aa14.2□□□□□ -0.14
VIM-206ENST00000487938 FBLN7Q53RD9 439 aa14.2□□□□□ -0.14
VIM-206ENST00000487938 MRPL52Q86TS9 123 aaKnown RBP14.2□□□□□ -0.14
VIM-206ENST00000487938 TMEM14CQ9P0S9 112 aa14.2□□□□□ -0.14
VIM-206ENST00000487938 TFPI2P48307 235 aa14.19□□□□□ -0.14
VIM-206ENST00000487938 ZNF124Q15973 351 aa14.19□□□□□ -0.14
VIM-206ENST00000487938 CT83Q5H943 113 aa14.19□□□□□ -0.14
VIM-206ENST00000487938 Q6ZN92 141 aa14.19□□□□□ -0.14
VIM-206ENST00000487938 RBPMS2Q6ZRY4 209 aaKnown RBP14.19□□□□□ -0.14
VIM-206ENST00000487938 TXN2Q99757 166 aa14.19□□□□□ -0.14
VIM-206ENST00000487938 HTR1DP28221 377 aa14.18□□□□□ -0.14
VIM-206ENST00000487938 CDSNQ15517 529 aa14.18□□□□□ -0.14
VIM-206ENST00000487938 RNF5Q99942 180 aa14.18□□□□□ -0.14
VIM-206ENST00000487938 UQCR10Q9UDW1 63 aa14.18□□□□□ -0.14
VIM-206ENST00000487938 BTF3P20290 206 aaKnown RBP14.18□□□□□ -0.14
VIM-206ENST00000487938 SPATA12Q7Z6I5 190 aa14.18□□□□□ -0.14
VIM-206ENST00000487938 BCL6BQ8N143 479 aaPredicted RBP14.18□□□□□ -0.14
VIM-206ENST00000487938 RBM14Q96PK6 669 aaKnown RBP14.18□□□□□ -0.14
VIM-206ENST00000487938 LPAR2Q9HBW0 351 aa14.18□□□□□ -0.14
VIM-206ENST00000487938 C2orf70A6NJV1 201 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 ZNF785A8K8V0 405 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 HES1Q14469 280 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 LY6G5BQ8NDX9 201 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 DPM3Q9P2X0 92 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 TRBV19A0A075B6N1 114 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 CCL21O00585 134 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 CHEK1O14757 476 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 NBR2O15453 112 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 IL4P05112 153 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 FCGR2BP31994 310 aaPredicted RBP14.17□□□□□ -0.14
VIM-206ENST00000487938 BPIFA4PQ86YQ2 179 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 ZNF491Q8N8L2 437 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 SHANK2-AS3Q9BTD1 123 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 TMEM208Q9BTX3 173 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 GFRA4Q9GZZ7 299 aa14.17□□□□□ -0.14
VIM-206ENST00000487938 NPIPB6E9PJ23 425 aa14.16□□□□□ -0.14
VIM-206ENST00000487938 ZC2HC1AQ96GY0 325 aa14.16□□□□□ -0.14
VIM-206ENST00000487938 PTPRQQ9UMZ3 2332 aa14.16□□□□□ -0.14
VIM-206ENST00000487938 HNRNPA3P51991 378 aaKnown RBP14.16□□□□□ -0.14
VIM-206ENST00000487938 ZNF138P52744 262 aa14.16□□□□□ -0.14
VIM-206ENST00000487938 OR4F17Q8NGA8 305 aa14.16□□□□□ -0.14
VIM-206ENST00000487938 CFHR4Q92496 578 aa14.16□□□□□ -0.14
VIM-206ENST00000487938 SOX21Q9Y651 276 aaPredicted RBP14.16□□□□□ -0.14
VIM-206ENST00000487938 H3BRN7 92 aa14.15□□□□□ -0.14
VIM-206ENST00000487938 LINC00173Q6ZV60 143 aa14.15□□□□□ -0.14
VIM-206ENST00000487938 KLHDC1Q8N7A1 406 aa14.15□□□□□ -0.14
VIM-206ENST00000487938 RNF125Q96EQ8 232 aa14.15□□□□□ -0.14
VIM-206ENST00000487938 M0R3E3 92 aa14.14□□□□□ -0.15
VIM-206ENST00000487938 HLA-DRB1P01911 266 aa14.14□□□□□ -0.15
VIM-206ENST00000487938 HOXB4P17483 251 aaPredicted RBP14.14□□□□□ -0.15
VIM-206ENST00000487938 SIGLEC15Q6ZMC9 328 aa14.14□□□□□ -0.15
VIM-206ENST00000487938 SRSF8Q9BRL6 282 aaKnown RBP14.14□□□□□ -0.15
VIM-206ENST00000487938 LOC102724200A0A096LPH7 203 aaPredicted RBP14.13□□□□□ -0.15
VIM-206ENST00000487938 DLEU1O43261 78 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 FAM120AOSQ5T036 256 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 CYB5R2Q6BCY4 276 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 OR11H6Q8NGC7 330 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 RAB1BQ9H0U4 201 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 PSG8Q9UQ74 426 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 ANKHD1Q8IWZ3 2542 aaKnown RBP14.13□□□□□ -0.15
VIM-206ENST00000487938 TRAV9-2A0A087WT02 112 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 IGHV1-24A0A0C4DH33 117 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 APOHP02749 345 aaPredicted RBP14.13□□□□□ -0.15
VIM-206ENST00000487938 IGLL1P15814 213 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 STPG4Q8N801 248 aa14.13□□□□□ -0.15
VIM-206ENST00000487938 SVEP1Q4LDE5 3571 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 FAM231BA6NCW3 169 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 OVOL3O00110 214 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 HAX1O00165 279 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 GNG7O60262 68 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 IGHV3-23P01764 117 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 NPSP0C0P6 89 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 LINC00614P0C842 121 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 UCNP55089 124 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 COL5A1-AS1Q5SY13 56 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 NPBQ8NG41 125 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 ZNF414Q96IQ9 312 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 TMEM70Q9BUB7 260 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 LAMTOR2Q9Y2Q5 125 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 RAXQ9Y2V3 346 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 LOC105371242A0A075B767 164 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 ARMS2P0C7Q2 107 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 CRIP1P50238 77 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 TMEM75Q8N9X5 138 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 NDFIP1Q9BT67 221 aa14.12□□□□□ -0.15
VIM-206ENST00000487938 NCBP2LA6PVI3 153 aaKnown RBP14.11□□□□□ -0.15
VIM-206ENST00000487938 MRPS12O15235 138 aaKnown RBP14.11□□□□□ -0.15
VIM-206ENST00000487938 NDUFA3O95167 84 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 CSN3P07498 182 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 PSG3Q16557 428 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms